Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M06
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   2.7  
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    27   6.1  
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540...    27   6.1  
01_01_1033 - 8178974-8178982,8179123-8179215,8179311-8179341,817...    27   6.1  

>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 251  TPACIAVQMIFCVLPIKLRLLF 316
            T  CI +Q + CVLP KL  +F
Sbjct: 1199 TEVCIGIQNVCCVLPSKLLAMF 1220


>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 167 YVQFHLTQYVCRLWVGLVVSSAGACVTRTPACIAVQMIF 283
           +VQF LT  +    V LV++   AC+T +    AVQ+++
Sbjct: 794 FVQFQLTVNI----VALVINFVSACITGSAPLTAVQLLW 828


>03_02_0069 +
           5401789-5401965,5403514-5403568,5403674-5405649,
           5405710-5405868,5406081-5406252,5406617-5406915,
           5407147-5407392
          Length = 1027

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 167 YVQFHLTQYVCRLWVGLVVSSAGACVTRTPACIAVQMIF 283
           +VQF LT  V    V L+V+ + AC+T +    AVQ+++
Sbjct: 824 FVQFQLTVNV----VALIVNFSSACLTGSAPLTAVQLLW 858


>01_01_1033 -
           8178974-8178982,8179123-8179215,8179311-8179341,
           8179434-8179519,8179572-8179624,8180026-8180140,
           8180505-8180579,8180683-8180730
          Length = 169

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 203 LWVGLVVSSAGACVTRTPACIAVQMIFCVLPIKLRLLFYILL 328
           LW+ + +   G C  RTP  + V    C++     LL YI +
Sbjct: 57  LWLAVALKKRGKCTIRTPDWMTVDS-DCLIAYLSVLLLYIFM 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,319,515
Number of Sequences: 37544
Number of extensions: 128103
Number of successful extensions: 285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)