Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M06
         (420 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ314804-1|ABC40723.1|  478|Homo sapiens opsin 4 (melanopsin) pr...    30   2.7  
BC113558-1|AAI13559.1|  478|Homo sapiens opsin 4 (melanopsin) pr...    30   2.7  
AF147788-1|AAF24978.1|  478|Homo sapiens melanopsin protein.           30   2.7  
AB065730-1|BAC05951.1|  472|Homo sapiens seven transmembrane hel...    30   2.7  

>DQ314804-1|ABC40723.1|  478|Homo sapiens opsin 4 (melanopsin)
           protein.
          Length = 478

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 212 GLVVSSAGACVTRTPACIAVQMIFCVLPIKLRLLFYILLYVFVCR 346
           GL+ S +   ++ TPA  A  M+ C     L LL  I  Y+F+ R
Sbjct: 216 GLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFR 260


>BC113558-1|AAI13559.1|  478|Homo sapiens opsin 4 (melanopsin)
           protein.
          Length = 478

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 212 GLVVSSAGACVTRTPACIAVQMIFCVLPIKLRLLFYILLYVFVCR 346
           GL+ S +   ++ TPA  A  M+ C     L LL  I  Y+F+ R
Sbjct: 216 GLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFR 260


>AF147788-1|AAF24978.1|  478|Homo sapiens melanopsin protein.
          Length = 478

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 212 GLVVSSAGACVTRTPACIAVQMIFCVLPIKLRLLFYILLYVFVCR 346
           GL+ S +   ++ TPA  A  M+ C     L LL  I  Y+F+ R
Sbjct: 216 GLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFR 260


>AB065730-1|BAC05951.1|  472|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 472

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 212 GLVVSSAGACVTRTPACIAVQMIFCVLPIKLRLLFYILLYVFVCR 346
           GL+ S +   ++ TPA  A  M+ C     L LL  I  Y+F+ R
Sbjct: 216 GLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFR 260


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,171,472
Number of Sequences: 237096
Number of extensions: 770333
Number of successful extensions: 1572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)