Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M06
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical ...    26   9.5  
AF002196-6|AAB53978.2|  406|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 106  NTQTASYKSDEKNFCQLKGILCSVP 180
            +T T+ + +DEK   ++ GI+C +P
Sbjct: 2566 HTMTSGFLTDEKTIGRVMGIMCQLP 2590


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 106  NTQTASYKSDEKNFCQLKGILCSVP 180
            +T T+ + +DEK   ++ GI+C +P
Sbjct: 2566 HTMTSGFLTDEKTIGRVMGIMCQLP 2590


>AF016673-5|AAB66123.1|  684|Caenorhabditis elegans Hypothetical
           protein T06D4.4 protein.
          Length = 684

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 257 ACIAVQMIFCVLPIKLRLLFYILLYVFVCRD 349
           A I  ++I CV P+ L +LF++LL++   +D
Sbjct: 27  ANIKDRIINCVYPVILIILFWLLLFIGARQD 57


>AF002196-6|AAB53978.2|  406|Caenorhabditis elegans Hypothetical
           protein C09D4.3 protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 105 KYSNGKLQIR*KKLLSIKRH 164
           KYS G L +  K LLSI+RH
Sbjct: 118 KYSTGMLPMEIKVLLSIRRH 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,747,396
Number of Sequences: 27780
Number of extensions: 137312
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)