Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M05
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    30   0.22 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    30   0.29 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.7  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   6.2  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   8.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   8.3  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = +2

Query: 122 SSSFTASPTIRLRRTSMSSAMVS*TKVNLTSWPWTAALSSVGCTSIRPRTFGS*ERSS 295
           SSSFT+S  + L  +S SS+  S     + S P T A S++  T+  P T  +   SS
Sbjct: 270 SSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSS 327


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 58  NITKAAELIPLSRDYDPHRKLIIFIHGFTDDPTKENFNVISNGFLNQGEFNILALDGS-- 231
           NI KA     +    D    L  ++H  +D    +NF++I+   L+  E N+  +  S  
Sbjct: 220 NIYKACLEGSMKDVIDSSNNLCEYLHEHSDPAYAKNFSLITPTILSMLELNVSEVTASVY 279

Query: 232 SLIRWLYLHSTTY 270
            L+R L+L +T +
Sbjct: 280 RLLRHLFLDATAF 292


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 419 SPVSVVNVLPAKPDM*EPRLCPIR*IASGLIPPFAIA 309
           +P+SV + +PA P +   RLC    IAS L PP A++
Sbjct: 133 APISVKSSIPAIPRVTFERLCYESAIASNL-PPNALS 168


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 333 THTALCHSREDFTELLSYEPNVRGRMEVQPTDERAAVQGQDVKFT 199
           THT +  S  + + LLSY  N  G    +P +   +++    K T
Sbjct: 179 THTQVADSATESSPLLSYTGNHNGAGTSKPVNNHGSIEQDAPKQT 223


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 130 IHGFTDDPTKENFNVISNGFLNQGEFNILALDGSSLIRWLYLHS 261
           +  F + P   NF+  S  F+ QG F I + D  +L  W   H+
Sbjct: 245 LEDFQELPFSNNFHGGSTTFVPQGNFVIGSADDRTLNVWNLRHT 288


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +1

Query: 157 KENFNVISNGFLNQGEFNIL 216
           K+N ++++N + +QG+F+ L
Sbjct: 116 KDNLDIVTNAYFSQGDFSNL 135


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 536 PSVCITSTYLASVCLRRSSAGILLKQGPAGSSPDI 432
           P++ I    L S CL+ S AG+ L Q P G SP I
Sbjct: 652 PNLEIFENVLKS-CLQ-SVAGVALSQSPIGESPII 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,829
Number of Sequences: 5004
Number of extensions: 51524
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)