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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M05
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0913 + 22540078-22540166,22540280-22540420,22541151-225412...    40   0.002
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008     34   0.097
05_04_0435 - 21198234-21198379,21199012-21199030,21199093-211993...    29   2.1  
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    29   2.8  
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   4.8  
12_01_0562 - 4555384-4555673,4555775-4555883,4555981-4556084,455...    28   6.4  
06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425...    28   6.4  
01_05_0680 - 24238840-24241242                                         28   6.4  
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    27   8.5  
10_08_0510 + 18430580-18431781,18433176-18433554                       27   8.5  
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930...    27   8.5  
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    27   8.5  

>08_02_0913 +
           22540078-22540166,22540280-22540420,22541151-22541281,
           22542278-22542460,22542555-22543195
          Length = 394

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 403 TTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTDA--KYVDVIHTDGGVY 546
           TT  GL +   + + PAGP F ++P     + TDA  K VD +H  GG++
Sbjct: 58  TTQGGLLISEGTVVSPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIF 107


>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
          Length = 1058

 Score = 33.9 bits (74), Expect = 0.097
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +1

Query: 220 LDGSSLIRWLYLHSTTYVRFIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHISG-FAGK 396
           L GS    W  L   +Y+        +++    KG ++ + + L  ++L   I   FA  
Sbjct: 571 LVGSLPTSWGQLQLLSYLNLSQNTFNDLIPDSFKGLVNLETLDLSHNNLSGGIPKYFANL 630

Query: 397 TFTTLTGLQVGRISGLDPAGPCFSNI 474
           TF T   L    + G  P+G  FSNI
Sbjct: 631 TFLTSLNLSFNNLQGQIPSGGVFSNI 656


>05_04_0435 -
           21198234-21198379,21199012-21199030,21199093-21199302,
           21199393-21199522,21199625-21199795,21199931-21200053,
           21200185-21200289,21200412-21201124
          Length = 538

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 88  LSRDYDPHRKLIIFIHGFTD---DPTKENFNVISNG 186
           L  D  P+R++I+++HG +D   +PT +N N+   G
Sbjct: 475 LEVDDFPYREIILYVHGSSDSAGEPTGQNKNICEAG 510


>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
            22436458-22436574,22436702-22436803,22437431-22437487,
            22437976-22438044,22438423-22438533,22438597-22438791,
            22439023-22439121,22439656-22440222,22440344-22440568,
            22441036-22441338,22441640-22441707,22441947-22442105,
            22442230-22442475,22442549-22442680,22443243-22443351,
            22444131-22444283,22444359-22444601,22444695-22444862,
            22445013-22445156,22445238-22445699,22446495-22446791,
            22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
 Frame = +1

Query: 109  HRKLIIFIHGFTDDPTKENFNVISNGFLNQGEFNILALD----GSSLIRWLYLHSTTYVR 276
            H K+I+F+HGF    T E++  +           ++A+D    G S I    + ++  + 
Sbjct: 1479 HEKVILFLHGFLG--TSEDWVPMMKAL--SPSARVIAVDLPGHGESEILQHDVENSNQIS 1534

Query: 277  FIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHIS 381
            F  + + ++L  + +  ++  A+ ++G+S+G+ I+
Sbjct: 1535 FSVQSVADLLLKLIR-NITDGAVVVVGYSMGARIA 1568


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 329 IPPFAIAARTSPSFSPMNRTYVVEWRYSQRMRELPSRAKMLNSPWFRKP 183
           IPPF  ++  S S  P+ RT  +   + +R   LPS   +  SP   +P
Sbjct: 427 IPPFPDSSSVSSSSQPVVRTSALSRAWRRRWAALPS-VDLARSPGISEP 474


>12_01_0562 -
           4555384-4555673,4555775-4555883,4555981-4556084,
           4556643-4556946
          Length = 268

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 367 GSHISGFAGKTFTTLTGLQVGRISGL-DP 450
           G  + GFAG++     GL  GRI GL DP
Sbjct: 70  GVSVFGFAGESMAVKQGLLAGRIPGLSDP 98


>06_03_0442 +
           20837492-20837621,20841842-20842075,20842435-20842528,
           20842653-20842870,20842956-20843095,20843231-20843878
          Length = 487

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 352 IGHSLGSHISGFAGKTFTTLTGLQVG 429
           +G SL   ISG  GK  TTLTG++VG
Sbjct: 216 VGLSLARTISGATGK--TTLTGVEVG 239


>01_05_0680 - 24238840-24241242
          Length = 800

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +1

Query: 97  DYDPHRKLIIFIHGFTDDPTKENFNVISNGFLNQGEF-NILALDGSSLIRWLYLHSTTYV 273
           D D  RKL+  ++     P    +N++ NG+L  G+      L    L R +    TTY 
Sbjct: 716 DIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYD 775

Query: 274 RFIGEK 291
             +G K
Sbjct: 776 ILVGMK 781


>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 340 AIHLIGHSLGSHISG------FAGKTFTTLTGLQVGRISGLDPAGPCFSNI 474
           A+ L G++L S+I        F+  T+ T   L    + G  P+G  FSNI
Sbjct: 551 ALSLSGNNLSSYIPNGGIPKYFSNLTYLTSLNLSFNNLQGQIPSGGIFSNI 601


>10_08_0510 + 18430580-18431781,18433176-18433554
          Length = 526

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
 Frame = +1

Query: 97  DYDPHRKLIIFIHGFTDD-----PTKENFNVISNGFLNQGEFNILALD---GSSLIRWLY 252
           D +  ++ +  +H   DD     P   +++ + NGF  +G+ + + LD     +++ +  
Sbjct: 63  DENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKM-LDQRISPNVVTYNS 121

Query: 253 LHSTTYVRFIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHISGF--AGKTFTTLTGLQV 426
           + +        +K  EVL  M K G+ PD +     +  S + GF  +G+    +  L+ 
Sbjct: 122 IIAALCKAQTVDKAMEVLTTMVKSGVMPDCM-----TYNSIVHGFCSSGQPKEAIVFLKK 176

Query: 427 GRISGLDP 450
            R  G++P
Sbjct: 177 MRSDGVEP 184


>06_01_1128 +
           9300144-9300273,9300340-9300472,9300585-9300656,
           9300783-9300926,9301453-9301524,9301584-9301677,
           9301782-9301928
          Length = 263

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 331 SPDAIHLIGHSLGSHISGFAGKTFTTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTD 504
           SPD++     + G H+SG    +   LT L+   +   + +GP  + I     LK  D
Sbjct: 80  SPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLD 137


>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 136 GFTDDPTKENFN-VISNGFLNQGEFNILALDGSSLIRWLYLHSTT 267
           G+ D+    N   ++S+  LNQ +   L  D SS++ W+   S T
Sbjct: 210 GYDDESVSGNVEGIVSSVQLNQAKSRALGDDNSSMVSWVTKDSDT 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,503,621
Number of Sequences: 37544
Number of extensions: 376451
Number of successful extensions: 988
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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