Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M05
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0913 + 22540078-22540166,22540280-22540420,22541151-225412... 40 0.002
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 34 0.097
05_04_0435 - 21198234-21198379,21199012-21199030,21199093-211993... 29 2.1
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 29 2.8
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 4.8
12_01_0562 - 4555384-4555673,4555775-4555883,4555981-4556084,455... 28 6.4
06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425... 28 6.4
01_05_0680 - 24238840-24241242 28 6.4
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 27 8.5
10_08_0510 + 18430580-18431781,18433176-18433554 27 8.5
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930... 27 8.5
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 27 8.5
>08_02_0913 +
22540078-22540166,22540280-22540420,22541151-22541281,
22542278-22542460,22542555-22543195
Length = 394
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 403 TTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTDA--KYVDVIHTDGGVY 546
TT GL + + + PAGP F ++P + TDA K VD +H GG++
Sbjct: 58 TTQGGLLISEGTVVSPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIF 107
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 33.9 bits (74), Expect = 0.097
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 220 LDGSSLIRWLYLHSTTYVRFIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHISG-FAGK 396
L GS W L +Y+ +++ KG ++ + + L ++L I FA
Sbjct: 571 LVGSLPTSWGQLQLLSYLNLSQNTFNDLIPDSFKGLVNLETLDLSHNNLSGGIPKYFANL 630
Query: 397 TFTTLTGLQVGRISGLDPAGPCFSNI 474
TF T L + G P+G FSNI
Sbjct: 631 TFLTSLNLSFNNLQGQIPSGGVFSNI 656
>05_04_0435 -
21198234-21198379,21199012-21199030,21199093-21199302,
21199393-21199522,21199625-21199795,21199931-21200053,
21200185-21200289,21200412-21201124
Length = 538
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +1
Query: 88 LSRDYDPHRKLIIFIHGFTD---DPTKENFNVISNG 186
L D P+R++I+++HG +D +PT +N N+ G
Sbjct: 475 LEVDDFPYREIILYVHGSSDSAGEPTGQNKNICEAG 510
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = +1
Query: 109 HRKLIIFIHGFTDDPTKENFNVISNGFLNQGEFNILALD----GSSLIRWLYLHSTTYVR 276
H K+I+F+HGF T E++ + ++A+D G S I + ++ +
Sbjct: 1479 HEKVILFLHGFLG--TSEDWVPMMKAL--SPSARVIAVDLPGHGESEILQHDVENSNQIS 1534
Query: 277 FIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHIS 381
F + + ++L + + ++ A+ ++G+S+G+ I+
Sbjct: 1535 FSVQSVADLLLKLIR-NITDGAVVVVGYSMGARIA 1568
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 329 IPPFAIAARTSPSFSPMNRTYVVEWRYSQRMRELPSRAKMLNSPWFRKP 183
IPPF ++ S S P+ RT + + +R LPS + SP +P
Sbjct: 427 IPPFPDSSSVSSSSQPVVRTSALSRAWRRRWAALPS-VDLARSPGISEP 474
>12_01_0562 -
4555384-4555673,4555775-4555883,4555981-4556084,
4556643-4556946
Length = 268
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 367 GSHISGFAGKTFTTLTGLQVGRISGL-DP 450
G + GFAG++ GL GRI GL DP
Sbjct: 70 GVSVFGFAGESMAVKQGLLAGRIPGLSDP 98
>06_03_0442 +
20837492-20837621,20841842-20842075,20842435-20842528,
20842653-20842870,20842956-20843095,20843231-20843878
Length = 487
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 352 IGHSLGSHISGFAGKTFTTLTGLQVG 429
+G SL ISG GK TTLTG++VG
Sbjct: 216 VGLSLARTISGATGK--TTLTGVEVG 239
>01_05_0680 - 24238840-24241242
Length = 800
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 97 DYDPHRKLIIFIHGFTDDPTKENFNVISNGFLNQGEF-NILALDGSSLIRWLYLHSTTYV 273
D D RKL+ ++ P +N++ NG+L G+ L L R + TTY
Sbjct: 716 DIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYD 775
Query: 274 RFIGEK 291
+G K
Sbjct: 776 ILVGMK 781
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +1
Query: 340 AIHLIGHSLGSHISG------FAGKTFTTLTGLQVGRISGLDPAGPCFSNI 474
A+ L G++L S+I F+ T+ T L + G P+G FSNI
Sbjct: 551 ALSLSGNNLSSYIPNGGIPKYFSNLTYLTSLNLSFNNLQGQIPSGGIFSNI 601
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 27.5 bits (58), Expect = 8.5
Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Frame = +1
Query: 97 DYDPHRKLIIFIHGFTDD-----PTKENFNVISNGFLNQGEFNILALD---GSSLIRWLY 252
D + ++ + +H DD P +++ + NGF +G+ + + LD +++ +
Sbjct: 63 DENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKM-LDQRISPNVVTYNS 121
Query: 253 LHSTTYVRFIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHISGF--AGKTFTTLTGLQV 426
+ + +K EVL M K G+ PD + + S + GF +G+ + L+
Sbjct: 122 IIAALCKAQTVDKAMEVLTTMVKSGVMPDCM-----TYNSIVHGFCSSGQPKEAIVFLKK 176
Query: 427 GRISGLDP 450
R G++P
Sbjct: 177 MRSDGVEP 184
>06_01_1128 +
9300144-9300273,9300340-9300472,9300585-9300656,
9300783-9300926,9301453-9301524,9301584-9301677,
9301782-9301928
Length = 263
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 331 SPDAIHLIGHSLGSHISGFAGKTFTTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTD 504
SPD++ + G H+SG + LT L+ + + +GP + I LK D
Sbjct: 80 SPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLD 137
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 136 GFTDDPTKENFN-VISNGFLNQGEFNILALDGSSLIRWLYLHSTT 267
G+ D+ N ++S+ LNQ + L D SS++ W+ S T
Sbjct: 210 GYDDESVSGNVEGIVSSVQLNQAKSRALGDDNSSMVSWVTKDSDT 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,503,621
Number of Sequences: 37544
Number of extensions: 376451
Number of successful extensions: 988
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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