Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M04
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    31   0.16 
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   5.9  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.8  

>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 325 RVVSAKQFLQHFASDRRHMKRPDGSWIKPPXPYPAICTSISTHNLDEYINM 477
           R+    +F  HF  DR  + R  GSW   P P   +   I +H +D+ +++
Sbjct: 145 RLGQVVEFESHF--DRYRLGRKSGSWKDEPRPGNGMVYGIGSHLIDQAVSL 193


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 14  VKRMFGSYVRMSHCVFQRS*IDVLWSLYL 100
           V +     VR++H  FQ   +  LW LY+
Sbjct: 639 VSQTINEIVRVNHFEFQEKFVGQLWKLYM 667


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +1

Query: 259 HKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQHFASDRRHM 381
           HK + +TFRT++++  +     + +SA++  Q + S++  +
Sbjct: 356 HKLIYDTFRTEKLVALNATPGSQFISAEEMNQKYISEQTQL 396


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 152 IVSSYGITM*FSCILGTVRLVSSMTWIQNYHFQHFFTN 265
           +V + G++  F+ +L  +    S+ W+ N+H   FF N
Sbjct: 13  LVLALGVS--FATLLAHLFTKPSLEWVYNHHATPFFAN 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,948
Number of Sequences: 5004
Number of extensions: 56018
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)