Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M04
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0160 - 18624952-18625106,18625411-18625535,18625954-186260...   125   3e-29
01_01_0702 + 5423059-5423571                                           28   4.6  
02_05_0467 - 29278795-29278903,29281467-29281585,29281754-292818...    28   6.0  

>05_04_0160 -
           18624952-18625106,18625411-18625535,18625954-18626087,
           18626221-18626298,18626456-18626561,18627739-18627836
          Length = 231

 Score =  125 bits (301), Expect = 3e-29
 Identities = 71/166 (42%), Positives = 96/166 (57%), Gaps = 6/166 (3%)
 Frame = +1

Query: 7   FHSEENVWKLCQD-VSLRIPEELD-RCFVVFISNPCRTVPLWKQRAGREDDRLVIWDYHV 180
           ++ EENV  LC++ +   I +      + VFISN  + VPLW Q+A    D  V+WDYHV
Sbjct: 31  YYCEENVHLLCKELIRSGISDPAGTNLYAVFISNEEKKVPLWYQKASHSGDGFVLWDYHV 90

Query: 181 IFMYSWDCK---TCLVYDLDSELPFPTFFHKYVTETFRTDQVLKSDFHRFFRVVSAKQFL 351
           I + S         LV+DLDS LPFP  F +YV++  R      S + R FRV+ A  FL
Sbjct: 91  ICIQSRRKNGEVLDLVWDLDSSLPFPCSFIQYVSDAIRPLSFGNSTYRRLFRVIHAPVFL 150

Query: 352 QHFASDRRHMKRPDGSWIKPPXPYPAICTSI-STHNLDEYINMDLD 486
           + FASDR HMK   G+WI+ P  Y +I     +T+NL+EYI M +D
Sbjct: 151 RSFASDRSHMKDHAGNWIQLPPKYESIVAEDGTTNNLNEYITMSMD 196


>01_01_0702 + 5423059-5423571
          Length = 170

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 24  CLEAMSGCLIAYSRGVR*MFCGLYI*SLSHGALMETKGR 140
           C      C  AY  GVR  FCG ++  L   A+ ET  R
Sbjct: 33  CCGVAEECTAAYIGGVRAAFCGDWLCGLCSEAVKETARR 71


>02_05_0467 -
           29278795-29278903,29281467-29281585,29281754-29281875,
           29283737-29283920
          Length = 177

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 349 LQHFASDRRHMKRPDGSWIKPPXPYPAICTSISTHNLDEYINMDLDLGPGQ---VFNLTE 519
           L+HF +    ++    +WIK   P   IC+ +     D  +     LGP Q   V  ++E
Sbjct: 91  LEHFVNQCHQLEIKCEAWIKQGDPKEVICSEVKRVQPDLLVVGSRGLGPFQRVFVGTVSE 150

Query: 520 FVQK 531
           F  K
Sbjct: 151 FCVK 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,251
Number of Sequences: 37544
Number of extensions: 352258
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)