BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_M04 (570 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88 SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88 SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88 SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0 SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 29 2.0 SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08) 28 6.2 SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35) 28 6.2 SB_45791| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.2) 27 8.2 SB_39513| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.58) 27 8.2 >SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 662 Score = 30.7 bits (66), Expect = 0.88 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +2 Query: 416 PHTLLFALLFQLTIWMNTSIWIWTWALVRY 505 PHT L A L L + NT WI TW RY Sbjct: 321 PHTRLLAKLDHLGVEGNTHGWIATWLTKRY 350 >SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 689 Score = 30.7 bits (66), Expect = 0.88 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +2 Query: 416 PHTLLFALLFQLTIWMNTSIWIWTWALVRY 505 PHT L A L L + NT WI TW RY Sbjct: 389 PHTRLLAKLDHLGVEGNTHGWIATWLTKRY 418 >SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 83 Score = 30.7 bits (66), Expect = 0.88 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = +1 Query: 136 AGREDDRLVIWDYHVIFMYSWDCKTCLVYDLDSEL-PFPTFFHKYVTETFRTDQV 297 A +D R +W Y D + + DS + P+P HKY +++ D V Sbjct: 15 AALQDGRFTVWYYPTAVFVDQDILPKTLLEKDSRISPYPAMLHKYCSDSKWDDAV 69 >SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6863 Score = 29.5 bits (63), Expect = 2.0 Identities = 12/42 (28%), Positives = 26/42 (61%) Frame = -3 Query: 316 CENLILKLDLYEMFL*HICEKMLEMVILNPSHRRDKSYSPKN 191 CE+L+ +L+ + ++ + EK+ ++ ++PS RR+ KN Sbjct: 3115 CESLVCELNTQKEYVNQLSEKVKSIIRVSPSQRRENLDKLKN 3156 >SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) Length = 1354 Score = 29.5 bits (63), Expect = 2.0 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = +1 Query: 232 SELPFPTFF---HKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQHFASDR 372 S P P FF H +VT+T +L FH F ++++F++ ++R Sbjct: 715 SNKPSPNFFRDGHAFVTDTKNMANLLNRHFHHIFSPSASEEFVRAQPNNR 764 >SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 467 Score = 27.9 bits (59), Expect = 6.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 388 PDGSWIKPPXPYPAICTSISTHNLDEYINMDLDLG 492 P+ + +PP P CT+ T N DE + ++ LG Sbjct: 138 PERTCTEPPGPETERCTTAGTGNPDEKLRIETILG 172 >SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08) Length = 415 Score = 27.9 bits (59), Expect = 6.2 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +1 Query: 4 LFHSE--ENVWKLCQDVSLRIPEELDRCFVVFISNPCRT 114 LFH E +N W L + +LR+ +E +V++ C T Sbjct: 131 LFHEESPKNNWMLTHEDALRLKKEKGFAAIVYVQRDCYT 169 >SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35) Length = 337 Score = 27.9 bits (59), Expect = 6.2 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -2 Query: 167 HMTRRSSSRPALCFHKGTVRQGLDIKTTK-HLSNSSGIR 54 HM R + +P C+H+G + ++ K HL + +G R Sbjct: 75 HMRRHTGEKPHKCYHEGCTKAYSRLENLKTHLRSHTGER 113 >SB_45791| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.2) Length = 304 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = +1 Query: 232 SELPFPTFF---HKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQHFASDR 372 S P P FF H +VT+T +L FH F ++++F+ ++R Sbjct: 76 SNKPSPNFFRDSHAFVTDTKNMANLLNRYFHYIFSPSASEEFVSAQPTNR 125 >SB_39513| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.58) Length = 171 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = +1 Query: 232 SELPFPTFF---HKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQHFASDR 372 S P P FF H +VT+T +L FH F ++++F+ ++R Sbjct: 62 SNKPSPNFFRDSHAFVTDTKNMANLLNRYFHYIFSPSASEEFVSAQPTNR 111 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,265,887 Number of Sequences: 59808 Number of extensions: 424256 Number of successful extensions: 862 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 862 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1349364063 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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