Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M04
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.88 
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    29   2.0  
SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08)       28   6.2  
SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)                 28   6.2  
SB_45791| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.2)           27   8.2  
SB_39513| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.58)          27   8.2  

>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 416 PHTLLFALLFQLTIWMNTSIWIWTWALVRY 505
           PHT L A L  L +  NT  WI TW   RY
Sbjct: 321 PHTRLLAKLDHLGVEGNTHGWIATWLTKRY 350


>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 416 PHTLLFALLFQLTIWMNTSIWIWTWALVRY 505
           PHT L A L  L +  NT  WI TW   RY
Sbjct: 389 PHTRLLAKLDHLGVEGNTHGWIATWLTKRY 418


>SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 136 AGREDDRLVIWDYHVIFMYSWDCKTCLVYDLDSEL-PFPTFFHKYVTETFRTDQV 297
           A  +D R  +W Y        D     + + DS + P+P   HKY +++   D V
Sbjct: 15  AALQDGRFTVWYYPTAVFVDQDILPKTLLEKDSRISPYPAMLHKYCSDSKWDDAV 69


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -3

Query: 316  CENLILKLDLYEMFL*HICEKMLEMVILNPSHRRDKSYSPKN 191
            CE+L+ +L+  + ++  + EK+  ++ ++PS RR+     KN
Sbjct: 3115 CESLVCELNTQKEYVNQLSEKVKSIIRVSPSQRRENLDKLKN 3156


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 232 SELPFPTFF---HKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQHFASDR 372
           S  P P FF   H +VT+T     +L   FH  F   ++++F++   ++R
Sbjct: 715 SNKPSPNFFRDGHAFVTDTKNMANLLNRHFHHIFSPSASEEFVRAQPNNR 764


>SB_28536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 388 PDGSWIKPPXPYPAICTSISTHNLDEYINMDLDLG 492
           P+ +  +PP P    CT+  T N DE + ++  LG
Sbjct: 138 PERTCTEPPGPETERCTTAGTGNPDEKLRIETILG 172


>SB_33443| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-08)
          Length = 415

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 4   LFHSE--ENVWKLCQDVSLRIPEELDRCFVVFISNPCRT 114
           LFH E  +N W L  + +LR+ +E     +V++   C T
Sbjct: 131 LFHEESPKNNWMLTHEDALRLKKEKGFAAIVYVQRDCYT 169


>SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)
          Length = 337

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 167 HMTRRSSSRPALCFHKGTVRQGLDIKTTK-HLSNSSGIR 54
           HM R +  +P  C+H+G  +    ++  K HL + +G R
Sbjct: 75  HMRRHTGEKPHKCYHEGCTKAYSRLENLKTHLRSHTGER 113


>SB_45791| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.2)
          Length = 304

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 232 SELPFPTFF---HKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQHFASDR 372
           S  P P FF   H +VT+T     +L   FH  F   ++++F+    ++R
Sbjct: 76  SNKPSPNFFRDSHAFVTDTKNMANLLNRYFHYIFSPSASEEFVSAQPTNR 125


>SB_39513| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.58)
          Length = 171

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 232 SELPFPTFF---HKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQHFASDR 372
           S  P P FF   H +VT+T     +L   FH  F   ++++F+    ++R
Sbjct: 62  SNKPSPNFFRDSHAFVTDTKNMANLLNRYFHYIFSPSASEEFVSAQPTNR 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,265,887
Number of Sequences: 59808
Number of extensions: 424256
Number of successful extensions: 862
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)