Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M04
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-6|CAA95844.1|  184|Caenorhabditis elegans Hypothetical pr...   104   4e-23
Z66513-2|CAA91330.2|  186|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>Z71266-6|CAA95844.1|  184|Caenorhabditis elegans Hypothetical
           protein R06C7.6 protein.
          Length = 184

 Score =  104 bits (250), Expect = 4e-23
 Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 2/179 (1%)
 Frame = +1

Query: 10  HSEENVWKLCQDVSLRIPEELDRCFVVFISNPCRTVPLWKQRAGREDDRLVIWDYHVIFM 189
           + EENV+KL + +     ++ +  F + ISN C+ +PLWKQ+A +  +  V+WDYHVI +
Sbjct: 13  YCEENVYKLIEKI-----DDKNGIFAIIISNDCKMIPLWKQKAAKSINGHVLWDYHVIAI 67

Query: 190 YSWDCKTCLVYDLDSELPFPTFFHKYVTETFRTDQVLKSD--FHRFFRVVSAKQFLQHFA 363
              +     VYDLDS L +   F +Y  +T    ++ + D  F R FRV+  + ++   +
Sbjct: 68  EK-EKNGSKVYDLDSTLEWSCDFLEYWEKTMNLAEMAQRDTKFRRKFRVIPGENYISLLS 126

Query: 364 SDRRHMKRPDGSWIKPPXPYPAICTSISTHNLDEYINMDLDLGPGQVFNLTEFVQKFYK 540
           SDR HM   +G ++KPP  +P I  S    NL E I M   +    V +  E  Q F K
Sbjct: 127 SDRSHMLSKNGVYLKPPPEWPLI-NSHKPSNLMELIRMSEQIENTTVMDEPELFQLFSK 184


>Z66513-2|CAA91330.2|  186|Caenorhabditis elegans Hypothetical
           protein F54D5.3 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 379 CGDDQTQNVVETA*QKQHERTCENLILKLDL 287
           C DD  +N V+ A QK  + TC+N++  L L
Sbjct: 106 CVDDTLRNDVKNALQKSTKNTCKNIVNTLVL 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,705
Number of Sequences: 27780
Number of extensions: 319808
Number of successful extensions: 729
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)