BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_M04 (570 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g41760.1 68415.m05162 expressed protein 144 3e-35 At1g03340.1 68414.m00313 expressed protein similar to hypothetic... 30 0.95 At2g33130.1 68415.m04061 rapid alkalinization factor (RALF) fami... 27 8.8 >At2g41760.1 68415.m05162 expressed protein Length = 221 Score = 144 bits (350), Expect = 3e-35 Identities = 77/162 (47%), Positives = 96/162 (59%), Gaps = 5/162 (3%) Frame = +1 Query: 7 FHSEENVWKLCQDVSLRIPEEL--DRCFVVFISNPCRTVPLWKQRAGREDDRLVIWDYHV 180 ++ EENV+ LC+ + E FVVFISN + VPLW Q+A D +V+WDYHV Sbjct: 21 YYCEENVYLLCKTLCENGVAEATCSDLFVVFISNEKKQVPLWHQKASTRADGVVLWDYHV 80 Query: 181 IFMY--SWDCKTCLVYDLDSELPFPTFFHKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQ 354 I + LV+DLDS LPFP+ YVTET + L +++ RFFR+V A F + Sbjct: 81 ICVQRKKESDSEPLVWDLDSTLPFPSPLASYVTETIQPSFQLFAEYQRFFRIVHAPLFFK 140 Query: 355 HFASDRRHMKRPDGSWIKPPXPY-PAICTSISTHNLDEYINM 477 HFASDRRHMK PDGSW P PY P + HNL EYI M Sbjct: 141 HFASDRRHMKEPDGSWTAQPPPYEPIVAQDGILHNLSEYIAM 182 >At1g03340.1 68414.m00313 expressed protein similar to hypothetical protein GB:AAC79114 Length = 385 Score = 30.3 bits (65), Expect = 0.95 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 292 DLYEMFL*HICEKMLEMVILNPSHRRDKSYSPKNT 188 DLYE H CE +L ++I N HR+ S K + Sbjct: 246 DLYERNRLHACESLLSLMIGNEQHRKTTMLSLKKS 280 >At2g33130.1 68415.m04061 rapid alkalinization factor (RALF) family protein Length = 103 Score = 27.1 bits (57), Expect = 8.8 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 325 RVVSAKQFLQHFASDRRHMKRPDGSWIKPPXPYPAICTS 441 R++ AK+F+ + A + +PDG KP Y C++ Sbjct: 56 RILQAKRFIDYEALKKNLPAKPDGKPDKPDNKYRRGCSA 94 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,433,192 Number of Sequences: 28952 Number of extensions: 292791 Number of successful extensions: 706 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 704 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1102220672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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