Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M04
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41760.1 68415.m05162 expressed protein                            144   3e-35
At1g03340.1 68414.m00313 expressed protein similar to hypothetic...    30   0.95 
At2g33130.1 68415.m04061 rapid alkalinization factor (RALF) fami...    27   8.8  

>At2g41760.1 68415.m05162 expressed protein
          Length = 221

 Score =  144 bits (350), Expect = 3e-35
 Identities = 77/162 (47%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
 Frame = +1

Query: 7   FHSEENVWKLCQDVSLRIPEEL--DRCFVVFISNPCRTVPLWKQRAGREDDRLVIWDYHV 180
           ++ EENV+ LC+ +      E      FVVFISN  + VPLW Q+A    D +V+WDYHV
Sbjct: 21  YYCEENVYLLCKTLCENGVAEATCSDLFVVFISNEKKQVPLWHQKASTRADGVVLWDYHV 80

Query: 181 IFMY--SWDCKTCLVYDLDSELPFPTFFHKYVTETFRTDQVLKSDFHRFFRVVSAKQFLQ 354
           I +          LV+DLDS LPFP+    YVTET +    L +++ RFFR+V A  F +
Sbjct: 81  ICVQRKKESDSEPLVWDLDSTLPFPSPLASYVTETIQPSFQLFAEYQRFFRIVHAPLFFK 140

Query: 355 HFASDRRHMKRPDGSWIKPPXPY-PAICTSISTHNLDEYINM 477
           HFASDRRHMK PDGSW   P PY P +      HNL EYI M
Sbjct: 141 HFASDRRHMKEPDGSWTAQPPPYEPIVAQDGILHNLSEYIAM 182


>At1g03340.1 68414.m00313 expressed protein similar to hypothetical
           protein GB:AAC79114
          Length = 385

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 292 DLYEMFL*HICEKMLEMVILNPSHRRDKSYSPKNT 188
           DLYE    H CE +L ++I N  HR+    S K +
Sbjct: 246 DLYERNRLHACESLLSLMIGNEQHRKTTMLSLKKS 280


>At2g33130.1 68415.m04061 rapid alkalinization factor (RALF) family
           protein
          Length = 103

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 325 RVVSAKQFLQHFASDRRHMKRPDGSWIKPPXPYPAICTS 441
           R++ AK+F+ + A  +    +PDG   KP   Y   C++
Sbjct: 56  RILQAKRFIDYEALKKNLPAKPDGKPDKPDNKYRRGCSA 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,433,192
Number of Sequences: 28952
Number of extensions: 292791
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)