Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M03
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical pr...    34   0.059
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    33   0.14 
Z73906-4|CAA98117.1|  508|Caenorhabditis elegans Hypothetical pr...    31   0.42 
Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical pr...    29   1.3  
L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q (ubi...    28   3.9  
AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical ...    28   3.9  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    27   6.8  
AF043703-4|AAK21502.2|  212|Caenorhabditis elegans Hypothetical ...    27   6.8  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    27   6.8  
U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    27   9.0  

>U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical
           protein C27F2.4 protein.
          Length = 283

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 219 VLDGACGTGIDSMMLVDEGFNLVSVDASDKMLKHA 323
           +LD  CGTG+ S +++D G   V VD S  ML+ A
Sbjct: 57  LLDIGCGTGMSSEVILDAGHMFVGVDVSRPMLEIA 91


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -2

Query: 388 LASSITHSSYFGFFLFS---HLALSACFNILSEASTETRLKPSSTSIMESIPVPQAPSST 218
           LA++I    Y  ++  S   + AL     I SEAST T ++PS+ S  E    P+ PS++
Sbjct: 242 LAATIGSRKYPWYYKMSSAMYPALCELAGICSEASTTTTVQPSTASTAEPTDSPEPPSTS 301


>Z73906-4|CAA98117.1|  508|Caenorhabditis elegans Hypothetical
           protein D2030.3 protein.
          Length = 508

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 251 VNPCSASTVQHFLASVFFQKPDEEVFI-ILCSFITVSNEFVP 129
           + P   +TVQ  +       PD  +++ +L +F+T++NE+VP
Sbjct: 314 IKPEVFATVQKAVCESAIMHPDSSIYLQLLAAFLTLNNEYVP 355


>Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 251 VNPCSASTVQHFLASVFFQKPDEEVFIILCSFITVSNEFVPRSSCLTVCILILYT 87
           V P ++S +     S+F+Q+    + II  SF+T    FV    C  + +L+L T
Sbjct: 81  VVPMASSLILGPFCSIFYQRSGARISIIAGSFLT-GGSFVVGPFCKNIYLLMLAT 134


>Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 251 VNPCSASTVQHFLASVFFQKPDEEVFIILCSFITVSNEFVPRSSCLTVCILILYT 87
           V P ++S +     S+F+Q+    + II  SF+T    FV    C  + +L+L T
Sbjct: 81  VVPMASSLILGPFCSIFYQRSGARISIIAGSFLT-GGSFVVGPFCKNIYLLMLAT 134


>L14429-7|AAK93871.1|  285|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 5 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +3

Query: 171 YKDFLIGLLKKHGCKKVLDGACGTG-IDSMMLVDEGFNLVSVDASDKMLKHALKARWEKR 347
           +KD+ +G L+     K LD A GTG I   +L       V+V   ++ +    K R EK 
Sbjct: 83  WKDYYVGGLQVPYNAKCLDMAGGTGDIAFRILRHSPTAKVTVSDINQPMLDVGKKRAEKE 142

Query: 348 KN--PKYDEWVIEEANWETLP 404
           ++  P   EWV   AN E +P
Sbjct: 143 RDIQPSRAEWVC--ANAEQMP 161


>AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical
           protein C18H7.9 protein.
          Length = 144

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 213 KKVLDGACGTGIDSMMLVDEGF-NLVSVDASDKMLKH 320
           KKVLD  CG G++S   +  G   +V  D S +M+++
Sbjct: 39  KKVLDIGCGNGLNSTTFLQWGARKVVGFDNSQEMIEN 75


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
           protein 8 protein.
          Length = 1206

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 33  IMSADQVFHSRSEGIPSEGVKDQYADGKA 119
           ++S ++VFH R   +  + + D++AD KA
Sbjct: 245 VLSFEEVFHQRGINVVKKIMFDEFADSKA 273


>AF043703-4|AAK21502.2|  212|Caenorhabditis elegans Hypothetical
           protein W10C8.4a protein.
          Length = 212

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 199 KNTDARK-CWTVLAEQGLTP 255
           KN DARK CW V  E+ L P
Sbjct: 119 KNYDARKECWNVFKEESLFP 138


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
           guanyly cyclase protein.
          Length = 1152

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 33  IMSADQVFHSRSEGIPSEGVKDQYADGKA 119
           ++S ++VFH R   +  + + D++AD KA
Sbjct: 219 VLSFEEVFHQRGINVVKKIMFDEFADSKA 247


>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -2

Query: 352 FFLFSHLALSACFNILSEASTETRLKPSSTSIMESIPVPQAPSSTFLHPCFF 197
           FF F H  +   +N+    S     K    ++  ++ +P+   + F   CFF
Sbjct: 791 FFSFEHNGIIYAYNLPPIISNNLETKSKQVNVTVNLTIPETEGNRF-KDCFF 841


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 135 CSTLELPYRLHTDPLHPLKVYLQISNEKL 49
           C T+  P +L    L P+ VY++IS+ K+
Sbjct: 295 CDTINHPSQLAKTSLAPIHVYIKISSPKV 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,154,443
Number of Sequences: 27780
Number of extensions: 238999
Number of successful extensions: 833
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)