Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M03
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.8  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   6.7  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 344 LLPPGFERVLQHFVRSV 294
           +LP GF +VL H V+ +
Sbjct: 68  MLPTGFRKVLVHNVKEL 84


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 328 LSACFNILSEASTETRLKPSSTSIMESIPVPQAPSSTFLH 209
           L  C  +    + E R +     I  +IPVPQA +   ++
Sbjct: 29  LGNCVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMIN 68


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 243 GIDSMMLVDEGFNLVSVDASDKMLK 317
           G+DS     EGF   +VD   ++L+
Sbjct: 388 GLDSQFCTVEGFITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 243 GIDSMMLVDEGFNLVSVDASDKMLK 317
           G+DS     EGF   +VD   ++L+
Sbjct: 441 GLDSQFCTVEGFITAAVDEWPRLLR 465


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 247 IPVPQAPSSTFLHP 206
           +PVPQ   ST L P
Sbjct: 796 VPVPQVNDSTILSP 809


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 254 GVNPCSASTVQHFL 213
           GV+ C A+ V HFL
Sbjct: 25  GVDECQATPVIHFL 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,990
Number of Sequences: 438
Number of extensions: 2625
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)