Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M02
         (410 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   0.67 
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   0.67 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   0.67 

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 KNYNKTYRKNHNKTYRRNHNK 210
           +NYN+ Y++ H     R+H +
Sbjct: 101 QNYNEPYQRTHENMLLRHHEE 121



 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 2   NFPPHNRPPYNNVY 43
           NFPP N   YN  Y
Sbjct: 94  NFPPINHQNYNEPY 107


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 KNYNKTYRKNHNKTYRRNHNK 210
           +NYN+ Y++ H     R+H +
Sbjct: 101 QNYNEPYQRTHENMLLRHHEE 121



 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 2   NFPPHNRPPYNNVY 43
           NFPP N   YN  Y
Sbjct: 94  NFPPINHQNYNEPY 107


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 148 KNYNKTYRKNHNKTYRRNHNK 210
           +NYN+ Y++ H     R+H +
Sbjct: 101 QNYNEPYQRTHENMLLRHHEE 121



 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 2   NFPPHNRPPYNNVY 43
           NFPP N   YN  Y
Sbjct: 94  NFPPINHQNYNEPY 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,302
Number of Sequences: 336
Number of extensions: 728
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)