Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M02
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    32   0.030
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    30   0.16 
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   4.6  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 32.3 bits (70), Expect = 0.030
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 118 YRKNHNKTYRKNYNKTYRKNHNKTYRRNHN 207
           YR+N+   YR+     YR+N    YRR H+
Sbjct: 226 YRRNNRDEYRRGGRDEYRRNSRSDYRRPHD 255



 Score = 29.5 bits (63), Expect = 0.21
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 118 YRKNHNKTYRKNYNKTYRKNHNKTYRR 198
           YR+     YR+N    YR+ H+  YRR
Sbjct: 234 YRRGGRDEYRRNSRSDYRRPHDDEYRR 260



 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 118 YRKNHNKTYRKNYNKTYRKNHNKTYR 195
           YR+N    YR+ ++  YR+     YR
Sbjct: 242 YRRNSRSDYRRPHDDEYRRPRGDEYR 267


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 109 NKTYRKNHNKTYRKNYNKTYRKNHNKTYRRNHNKT 213
           N +   ++ + Y  N N+ Y  N+N+ Y  N+N +
Sbjct: 602 NSSSGNSNKQNYNNNNNQNYGNNNNQNYNNNNNSS 636



 Score = 28.3 bits (60), Expect = 0.49
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 112 KTYRKNHNKTYRKNYNKTYRKNHNKTYRRN 201
           + Y  N+N+ Y  N N+ Y  N+N +   N
Sbjct: 611 QNYNNNNNQNYGNNNNQNYNNNNNSSQGGN 640



 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 82  HNRTYNKI*NKTYRKNHNKTYRKNYNKTYRKN 177
           + + YN   N+ Y  N+N+ Y  N N +   N
Sbjct: 609 NKQNYNNNNNQNYGNNNNQNYNNNNNSSQGGN 640


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +1

Query: 82  HNRTYNKI*NKTYRKNHNKTYRKNYNKTYRKNHNKTYRRNHN 207
           H    ++   ++  + H+   R++  ++YR + N    R HN
Sbjct: 177 HRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHN 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,144
Number of Sequences: 5004
Number of extensions: 10467
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)