BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_M02 (410 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.030 SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 30 0.16 SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 4.6 >SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 32.3 bits (70), Expect = 0.030 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 118 YRKNHNKTYRKNYNKTYRKNHNKTYRRNHN 207 YR+N+ YR+ YR+N YRR H+ Sbjct: 226 YRRNNRDEYRRGGRDEYRRNSRSDYRRPHD 255 Score = 29.5 bits (63), Expect = 0.21 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 118 YRKNHNKTYRKNYNKTYRKNHNKTYRR 198 YR+ YR+N YR+ H+ YRR Sbjct: 234 YRRGGRDEYRRNSRSDYRRPHDDEYRR 260 Score = 25.4 bits (53), Expect = 3.5 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +1 Query: 118 YRKNHNKTYRKNYNKTYRKNHNKTYR 195 YR+N YR+ ++ YR+ YR Sbjct: 242 YRRNSRSDYRRPHDDEYRRPRGDEYR 267 >SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 658 Score = 29.9 bits (64), Expect = 0.16 Identities = 10/35 (28%), Positives = 19/35 (54%) Frame = +1 Query: 109 NKTYRKNHNKTYRKNYNKTYRKNHNKTYRRNHNKT 213 N + ++ + Y N N+ Y N+N+ Y N+N + Sbjct: 602 NSSSGNSNKQNYNNNNNQNYGNNNNQNYNNNNNSS 636 Score = 28.3 bits (60), Expect = 0.49 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = +1 Query: 112 KTYRKNHNKTYRKNYNKTYRKNHNKTYRRN 201 + Y N+N+ Y N N+ Y N+N + N Sbjct: 611 QNYNNNNNQNYGNNNNQNYNNNNNSSQGGN 640 Score = 25.4 bits (53), Expect = 3.5 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = +1 Query: 82 HNRTYNKI*NKTYRKNHNKTYRKNYNKTYRKN 177 + + YN N+ Y N+N+ Y N N + N Sbjct: 609 NKQNYNNNNNQNYGNNNNQNYNNNNNSSQGGN 640 >SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosaccharomyces pombe|chr 2|||Manual Length = 376 Score = 25.0 bits (52), Expect = 4.6 Identities = 9/42 (21%), Positives = 20/42 (47%) Frame = +1 Query: 82 HNRTYNKI*NKTYRKNHNKTYRKNYNKTYRKNHNKTYRRNHN 207 H ++ ++ + H+ R++ ++YR + N R HN Sbjct: 177 HRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHN 218 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 882,144 Number of Sequences: 5004 Number of extensions: 10467 Number of successful extensions: 59 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 54 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 142254980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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