Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_M02
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical p...    28   3.0  
Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    26   9.2  

>Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 109 NKTYRKNHNKTYRKNYNKTYRKNHNKTYRRN 201
           NKT RK+H  T R N N T  +  ++   +N
Sbjct: 471 NKTNRKSHTSTDRTNSNNTLTRKKSRDAGKN 501



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 109 NKTYRKNHNKTYRKNY---NKTYRKNHNKTYRRNHNKT 213
           N    K  ++  R N    NKT RK+H  T R N N T
Sbjct: 452 NPAIEKKKSEDRRNNMDRRNKTNRKSHTSTDRTNSNNT 489


>Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 109 NKTYRKNHNKTYRKNYNKTYRKNHNKTYRRN 201
           NKT RK+H  T R N N T  +  ++   +N
Sbjct: 471 NKTNRKSHTSTDRTNSNNTLTRKKSRDAGKN 501



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 109 NKTYRKNHNKTYRKNY---NKTYRKNHNKTYRRNHNKT 213
           N    K  ++  R N    NKT RK+H  T R N N T
Sbjct: 452 NPAIEKKKSEDRRNNMDRRNKTNRKSHTSTDRTNSNNT 489


>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 121 RKNHNKTYRKN-YNKTYRKNHNKTYRRN 201
           R N NK  RK  Y+ T R+NH K+   N
Sbjct: 102 RCNRNKNQRKQEYSNTQRQNHKKSEPSN 129


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 115 TYRKNHNKTYRKNYNKTYRKNHN 183
           +Y+ NHN +  K+Y + Y  NHN
Sbjct: 238 SYQHNHNHSNTKDYGRQY-SNHN 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,828,338
Number of Sequences: 27780
Number of extensions: 57108
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)