Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_M01
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 60 2e-10
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 60 2e-10
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 42 4e-05
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 41 1e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 36 0.004
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.0
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 27 1.8
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 27 2.3
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 26 3.1
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 4.1
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 4.1
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 5.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 7.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.4
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.4
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 9.4
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 9.4
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +1
Query: 178 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAP----GPIN 345
+ +Q+AEF+EAF L D D+DG I N+L SLG+ + EL +M+ E G I+
Sbjct: 7 TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66
Query: 346 FTQLLGLFAXRMSGGSDEE 402
FT+ L + A +M +EE
Sbjct: 67 FTEFLTMMARKMKDTDNEE 85
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 196 EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA 330
E +EAF++ D D +G I +L SLG S++E+ +M+ EA
Sbjct: 86 EVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA 130
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 60.1 bits (139), Expect = 2e-10
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Frame = +1
Query: 133 SRKAKRTGSNVFSMFSQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELD 312
++ AKR S F+ + Q+ E KEAF L+D D DG IG+ D++ SL + ASE ++
Sbjct: 28 AQAAKRASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSIN 87
Query: 313 EMVGEAPGPIN---FTQLLGLFAXRMSGGSD 396
M PIN F +G R+S +D
Sbjct: 88 HMFESINPPINLAAFLTAMGSMLCRISPRND 118
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 196 EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAP---GPINF 348
EF + FQ+ D D G+IG +LR SLG S +E+DE++ P G +N+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNY 131
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +1
Query: 178 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEAPGPINFTQL 357
S++Q E KEAF L D DKDG+I + + + SLG ++ EL ++ E I+ +
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKF 63
Query: 358 LGLFAXRMSGGSDEE 402
+ + ++ EE
Sbjct: 64 MSFVSNKLRETESEE 78
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 35.9 bits (79), Expect = 0.004
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +1
Query: 178 SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKEL 309
+++Q + EAF+L D DKD I ++LRA +LG A + E+
Sbjct: 32 TEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEV 75
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 326 SPTISSSSFSEASLPRESNVARKSFLPMMPSLSWSISWKASLNSAT 189
S +++SSS + +SL S + S P + S S+S A+ NSAT
Sbjct: 146 SSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSAT 191
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 329 ASPTISSSSFSEASLPRESNVARKSFLPMMPSLSWSISWKASLNSAT 189
AS SSS S +++ +V+ S P + + SISW +S ++AT
Sbjct: 126 ASNYTQSSSNSTSTMNSTGSVSGGSVYPTNSTTNSSISWNSSTSAAT 172
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 196 EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMV 321
E +EAF L D G I DLR + LG ++++L M+
Sbjct: 13 EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML 54
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 329 ASPTISSSSFSEASLPRESNVARKSF-LPMMPS 234
+SP++ +++ + P++S V+RKSF P P+
Sbjct: 35 SSPSVPEGTYTVLNNPKQSTVSRKSFSAPTSPT 67
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +2
Query: 272 STPWAGSPQRRSSMR-WSAKHPVPSTSPSCWVSSLTACPAALTRNDVVF---NAFKTFDE 439
+T W GSP+ S + A++ S W + A L R+ ++ NAF T +
Sbjct: 376 TTSW-GSPKSYSEIGDLFARYCEKKISSLPWSDLPISDEADLIRDQLLSMNRNAFLTINS 434
Query: 440 QGEIDSERLRHALMTWG 490
Q ++ E+ H + WG
Sbjct: 435 QPALNGEKSSHPVFGWG 451
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 332 PVPSTSPSCWVSSLTACPAALTRNDVVFNA 421
P PS +PS VSS + PAA++ N +A
Sbjct: 108 PPPSNNPSRHVSSTSNKPAAVSPNPAAHHA 137
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = -3
Query: 335 PGASPTISSSSFSEASLPRESNVARKSFLPMMPSLSWSISWKASLNSATCFCENI 171
P + ++S S +L E+NV + +P + + + + + S N+A C C +
Sbjct: 83 PAGNTNTPTTSNSNQNL--ENNVTSAASMPAILNAAGQLEFSPSTNNALCCCTTV 135
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 404 DVVFNAFKTFDEQGEIDSERLRHALMTWGDKFSADEVH 517
DV+F+A++ D+ I S L L+ W FS +H
Sbjct: 411 DVIFDAWRCDDDNYRIASVGLDRKLLLW--DFSVSAIH 446
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 187 QVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASE 300
+ A+FK+ F DKD + + +L A + L +LA +
Sbjct: 212 EYAKFKDKFPEAPLDKDNLQTQKELEARIECLKQLAEK 249
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 9.4
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -3
Query: 329 ASPTISSSSFSEASLPRESNVARKSFLPMMPSLSWSISWKASLNSA 192
+S T++SSS S +S+P S+ + + + S S S + +S +S+
Sbjct: 226 SSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSS 271
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 335 VPSTSPSCWVSSLTACPAALTRNDVVFN 418
VPS SP+ S T+ P+ ++R+ ++ N
Sbjct: 352 VPSNSPATLNSYTTSVPSGMSRHPMLMN 379
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 434 DEQGEIDSERLRHALMTWGDKFSADEVHEAYD 529
DE+GEID + + AL+ + DE +D
Sbjct: 716 DEEGEIDEDEVWKALVDSKPQLEMDEEESDFD 747
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 269 HSTPWAGSPQ 298
HSTPWA SP+
Sbjct: 166 HSTPWASSPR 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,509
Number of Sequences: 5004
Number of extensions: 27968
Number of successful extensions: 158
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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