Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L24
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.5  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   1.5  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   2.7  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   4.6  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   4.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   4.6  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   6.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.1  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   8.1  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   8.1  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   8.1  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   8.1  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   8.1  

>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 450 RKAGTRVRIPPARVAPLSGDDLRAGIDQARHRPH 349
           RK+ T ++IPP     ++   + + + + RHRP+
Sbjct: 214 RKSSTELKIPPVETRIVAEIPVPSSVKRRRHRPN 247


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 214 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 86
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 423 PPARVAPLSGDDLRAGIDQARHRPHPLPVQTRRAPVLRANPYSEVTDP 280
           P +  +P S   + +  D A     P+  Q ++ PV+  N     TDP
Sbjct: 134 PTSPTSPTSSGPIGSNFDSASEHNGPVYPQDQQGPVIIPNSAISSTDP 181


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -3

Query: 459 EDPRKAGTRVRIPPARVAPLSGDDLRAGIDQARHRPHPLPVQT--RRAPVLRANP--YSE 292
           + P  A T  R  PA    +S +        A  RP P  VQT    APV  A P  Y  
Sbjct: 330 KSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSSSAAPVDSAEPVAYQP 389

Query: 291 VTDPI 277
           +  PI
Sbjct: 390 IKKPI 394


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 269 FPYLHYSID*RLFTLETCCGYGYEPARHL 183
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 397 RKGGDPRGRNPDPRSGLPR 453
           R G   R R+P PRSG PR
Sbjct: 340 RLGSLHRSRSPSPRSGRPR 358


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 423 PPARVAPLSGDDLRAGIDQARHRPHPLPVQTRRAP 319
           PP R AP       A +      P P P + ++AP
Sbjct: 10  PPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAP 44


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 434 GSGFRPRGSPPFRGTTYAPASTRPGTGRIRFPSKP 330
           G+ +     PP R T+  P S +PG     + S P
Sbjct: 64  GNAYSQAPYPPARPTSQRPNSWQPGNASTMYASPP 98


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 425 FRPRGSPPFRG 393
           F PRGSPP RG
Sbjct: 439 FAPRGSPPVRG 449


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 151 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 8
           P  VSGH      LR+   IS    SM +ERS       R ++  + +
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 70  PWNPIEGRYGSEREEHRI 123
           P+ P+EG Y + ++ HRI
Sbjct: 3   PYEPVEGLYVNAKQYHRI 20


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 407 PPFRGTTYAPASTRPGTGRIRFPSKPDAPRSSEPI 303
           P F GT       R   G +R PS  +   S E I
Sbjct: 827 PTFEGTKPEDLLVRKQRGNVRLPSSSEGETSDEEI 861


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 333 TRRAPVLRANPYSEVTDPICRLPLPTLFYR 244
           T RAPVL A   +E +  +   PLP L ++
Sbjct: 297 TFRAPVLEAYAMTEASHQMTTNPLPPLVHK 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,203
Number of Sequences: 5004
Number of extensions: 45402
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)