Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L24
(488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 31 0.34
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 29 1.4
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 29 2.4
AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical ... 29 2.4
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 29 2.4
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 28 3.2
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 28 3.2
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 28 3.2
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 28 3.2
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 28 3.2
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 3.2
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 28 4.2
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 5.5
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 5.5
AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical ... 27 5.5
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 27 5.5
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 27 7.3
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 27 7.3
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 27 7.3
Z95559-15|CAB63361.1| 917|Caenorhabditis elegans Hypothetical p... 27 9.7
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 27 9.7
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 27 9.7
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 27 9.7
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 315 GPGRVG-FGREADAAGAG-PGRCRRVSRPPKGGRPARAESGPAFRPSADLPS 464
GPG G G DA G PG P +GG+ +R GP+ RP P+
Sbjct: 172 GPGPAGPTGPTGDAGAPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPQGPA 223
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 452 RGRPERGSGFRPRGSPPFRGTTYAPAST-RPGTGRIRFPSKP 330
+G+P R PRG P +G TY P S PG R P P
Sbjct: 185 QGKPGRAG---PRGPPGAKGQTYLPGSAGHPGNSGRRGPPGP 223
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +3
Query: 315 GPGRVGFGREADAAGAGPGRCRRVSRPPKGGRPARAESGPAFRPSADLPSRKA 473
G R G G G PGR +R +G RP GPA + P A
Sbjct: 552 GSPRGGMGGGGGFRGGPPGRGGMANRRGRGKRPGDGRGGPASKRDNGKPDFSA 604
>AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical
protein C08G5.5 protein.
Length = 99
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 419 PRGSPPFRGTTY-APASTRPGTGRIRFPSKPDAPRSSEP 306
P G PP +Y AP + P T +PS P PR S P
Sbjct: 44 PSGLPPMVSESYSAPYAQAPPTST-GYPSAPPMPRPSSP 81
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 392 TTYAPASTRPGTGRIR-FPSKPDAPRSSEPILIPKLRIQFA 273
T APA+TRP T IR P P+ R+ P P+ I+ A
Sbjct: 308 TQRAPAATRPATSAIRVIPIAPNVVRNGAP-AAPRKPIEIA 347
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 380 PASTRPGTGRIRFPSKPDAPRSSEPILIPKLRI 282
PA P ++ SKP P + P+L+P++ +
Sbjct: 319 PAMMSPNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 486 REPTRPYG*EDPRKAGTRVRIPPARVAPLSGDDLRAGIDQARHRPHPLPVQTRRA 322
+E P+ EDP ++ PP + P + D+ A AR P P P ++R+
Sbjct: 640 KETPLPFEVEDPGMMSLGLQSPPIEITPFTDDESAA--SDARSSPVP-PTSSKRS 691
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 486 REPTRPYG*EDPRKAGTRVRIPPARVAPLSGDDLRAGIDQARHRPHPLPVQTRRA 322
+E P+ EDP ++ PP + P + D+ A AR P P P ++R+
Sbjct: 640 KETPLPFEVEDPGMMSLGLQSPPIEITPFTDDESAA--SDARSSPVP-PTSSKRS 691
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 486 REPTRPYG*EDPRKAGTRVRIPPARVAPLSGDDLRAGIDQARHRPHPLPVQTRRA 322
+E P+ EDP ++ PP + P + D+ A AR P P P ++R+
Sbjct: 640 KETPLPFEVEDPGMMSLGLQSPPIEITPFTDDESAA--SDARSSPVP-PTSSKRS 691
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = -3
Query: 453 PRKAGTRVRIPPARVAPLSGDDLRAGIDQARHRPHPLPVQTRRAPVLRANPYSEVTDPIC 274
P AG + +PPA P +G + GI+ P P+ Q + + A P P
Sbjct: 86 PGMAGPPL-LPPAVAPPTNGQETLVGINNPVQPPPPVQYQNQGPQYIEAPPPPPSPPPPP 144
Query: 273 RLPLPTLFYRLEALHLGD 220
P P L + L L D
Sbjct: 145 PPPPPQLQQQQVQLPLQD 162
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 387 LRAGIDQARHRPHPLPVQ---TRRAPVLRANPYSEVTDPI 277
L++ ID H PHP+ VQ T+ V+ P V+ P+
Sbjct: 905 LKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 27.9 bits (59), Expect = 4.2
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Frame = +3
Query: 315 GPGRVG-------FGREADAAG----AGPG-RCRRVSRPP--KGGRPARAESGPAFRPSA 452
GPGR G FG + D +G GPG R R P GG+ R + GP F P
Sbjct: 411 GPGRQGGRGQGPDFGPQDDFSGRRGSGGPGGRGGRGQEPDFGPGGQGGRGQ-GPDFGPQD 469
Query: 453 DLPSRKAA 476
D P R+ +
Sbjct: 470 DFPGRRGS 477
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 315 GPG-RVGFGREADAAGAGPGRCRRVSRPPKGGRPARAESGPAFRPSADLPSRKAA 476
GPG + G G+++D+ RR S P GGR GP F P D P R+ +
Sbjct: 493 GPGSQGGRGQDSDSGSQDAFPGRRGSGGP-GGRG----QGPDFGPQDDFPGRRGS 542
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -3
Query: 156 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 28
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 140 IRTPPQMRCSSRSEPYLPSIGFHGT 66
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 476 RGLTARKIRGRPE--RGSGFRPRGSPPFRGTTYAPASTRPGTGR 351
RG+ + +RG P RG G RG PP RG PG GR
Sbjct: 1472 RGMNS-PMRGMPPPMRGGGPPMRGGPPMRGGPPMFRGGPPGPGR 1514
>AF000191-1|AAB52884.1| 533|Caenorhabditis elegans Hypothetical
protein T23C6.3 protein.
Length = 533
Score = 27.5 bits (58), Expect = 5.5
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Frame = -1
Query: 386 YAPASTRPGTGRIRFPSKPDAPRSSEPILIPKLRIQFADFPYLHYSID*RLFTLETCCGY 207
+AP S PG + + P+ +S IP++++++ + P + T+ +
Sbjct: 292 FAPVSRTPGHLSVVWNPMPNVVKSPRSEEIPEIKVEYEEVPSSSTFLSNNETTIASDMDM 351
Query: 206 GYEPARHLHVHP--SPEFSRSAESIRTPPQMRCSSRSE--PYLPSIGFHGTRTL------ 57
+ + + + SPE + S + S+ E P LPS GT TL
Sbjct: 352 SIDRPQSMDMSQTLSPEQTLSPREKLQVQDRKISTTQETPPALPSPS--GTLTLPTVPAS 409
Query: 56 RQKRKLFPDLSAASSG 9
KRK F DL A +G
Sbjct: 410 TLKRKEFGDLLACPTG 425
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 392 TTYAPASTRPGTGRIRF-PSKPDAPRSSEP 306
T APA+TRP T IR P P+ R+ P
Sbjct: 312 TQRAPAATRPSTSAIRVTPIAPNVVRNGAP 341
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/55 (36%), Positives = 22/55 (40%)
Frame = +3
Query: 315 GPGRVGFGREADAAGAGPGRCRRVSRPPKGGRPARAESGPAFRPSADLPSRKAAS 479
G G G G EA G G C P GGRP + G +P A P AS
Sbjct: 96 GGGGGGGGGEAAGGGGGCTGCCNPGPPGPGGRPGK--PGTPGKPGA--PGNPGAS 146
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 161 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 60
FS S E+ T Q R + S P YLPSIG + T T
Sbjct: 11 FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 336 GREADAAGAG-PGRCRRVSRPPKGGRPARAESGPAFRPSADLPS 464
G DA G PG P +GG+ +R GP+ RP P+
Sbjct: 173 GPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPPGPA 216
>Z95559-15|CAB63361.1| 917|Caenorhabditis elegans Hypothetical
protein Y41E3.11 protein.
Length = 917
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -1
Query: 422 RPRGS-PPFRGTTYAPASTRPGTGRI---RFPSKPDAPRSSEP-ILIPKLRI 282
RP S PP G Y+P + T I FPS P EP I++P ++I
Sbjct: 641 RPSTSGPPSGGAQYSPRGSSSSTMNITHTTFPSVPSPLVREEPTIILPPVKI 692
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 315 GPGRVGFGREADAAGAGPGRCRRVSRPP---KGGRPARAESGPAFRPSADLPS 464
GPG G A AGA PG+ P +GG+ +R GPA P P+
Sbjct: 162 GPGPAGPQGPAGDAGA-PGQAGAPGHPGAPGQGGQRSRGTPGPAGAPGPQGPA 213
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 136 RILSADLENSGEGCTWRCRAGSYPYPQQVS 225
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 136 RILSADLENSGEGCTWRCRAGSYPYPQQVS 225
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 136 RILSADLENSGEGCTWRCRAGSYPYPQQVS 225
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,646
Number of Sequences: 27780
Number of extensions: 285084
Number of successful extensions: 1202
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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