Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L24
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.57 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   9.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 443 PERGSGFRPRGSPPFRGTTYAPASTRP 363
           P+RGS   P   PP  G   AP S  P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 104 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 21
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 375 CRRVSRPPKGGRPARAESG 431
           C   S PP+   P+R ESG
Sbjct: 389 CVACSPPPRQTPPSRKESG 407


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 81  RIPWNSNAQAEKKTLPGPLG 22
           +IPW+ N +A  K   G  G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 354 PHPLPVQTRRAPVLRANPYSEV 289
           P PLP     A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 131 VSGYSLRTLKIQVRDVR 181
           V+  ++  LKIQ+RDV+
Sbjct: 14  VNAMTIEELKIQLRDVQ 30


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 17  TPPRGPGRV 43
           +PPRGPG V
Sbjct: 397 SPPRGPGGV 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,886
Number of Sequences: 438
Number of extensions: 4331
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)