BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L24 (488 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g07220.1 68414.m00768 expressed protein 40 7e-04 At1g76965.1 68414.m08961 glycine-rich protein 29 0.015 At1g47660.1 68414.m05295 hypothetical protein 29 1.3 At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 2.2 At2g19150.1 68415.m02235 pectinesterase family protein contains ... 29 2.2 At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 2.9 At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa... 28 3.9 At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 3.9 At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 3.9 At5g22390.1 68418.m02612 expressed protein 27 5.1 At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 27 5.1 At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 27 5.1 At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 5.1 At5g13650.2 68418.m01585 elongation factor family protein contai... 27 6.8 At5g13650.1 68418.m01584 elongation factor family protein contai... 27 6.8 At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 9.0 At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 9.0 >At1g07220.1 68414.m00768 expressed protein Length = 507 Score = 40.3 bits (90), Expect = 7e-04 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = -1 Query: 353 RIRFPSKPDAPRSSEPILIPKLRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHV 177 R+R P K +PRS +L+ L + F F L Y +D + +T G+ EP H+ Sbjct: 6 RLRLPHK-SSPRSPSYLLLCVLALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HI 63 Query: 176 HPSPEFSRSAESIRTPPQMRCSSRSEPY 93 P FS + + + ++CS S PY Sbjct: 64 FPRKSFSAATKHSQAYRILQCSYFSCPY 91 >At1g76965.1 68414.m08961 glycine-rich protein Length = 158 Score = 29.5 bits (63), Expect(2) = 0.015 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -1 Query: 365 PGTGRIRFPSKPDAPRSSEPILIPKLRIQFAD 270 PG + FP KP+ P P +P+L + F D Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124 Score = 25.4 bits (53), Expect(2) = 0.015 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -1 Query: 458 KIRGRPERGSGFRPRGSPPFRGTTYAPASTRPGTG 354 K+ GR G GF G+ P G+ Y PGTG Sbjct: 23 KVSGRGG-GGGFVGSGNSPSIGSGYFGGGGNPGTG 56 >At1g47660.1 68414.m05295 hypothetical protein Length = 275 Score = 29.5 bits (63), Expect = 1.3 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = -1 Query: 419 PRGSPPFRGTTYAPASTRPGTGRIRFPSKPDAPRSSEPILIP 294 PR +PP R TT PA RP T +P+ P P + P+ +P Sbjct: 26 PRAAPPARPTTPPPA--RPTTPPPVWPTTP--PPAGAPVAVP 63 >At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to autophagy 7 [Arabidopsis thaliana] GI:19912147; contains Pfam profile PF00899: ThiF family Length = 697 Score = 28.7 bits (61), Expect = 2.2 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = -2 Query: 151 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 17 P ++G CG +V NH++LL +S+ L+ ++S +R + Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86 >At2g19150.1 68415.m02235 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase Length = 339 Score = 28.7 bits (61), Expect = 2.2 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +1 Query: 121 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 222 I GG+ + ++ EGCT + R G YP P +V Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217 >At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140 [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis thaliana] Length = 926 Score = 28.3 bits (60), Expect = 2.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 146 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 48 +S + P R ++PYLPS G RTLR+K Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247 >At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase family protein belongs to Pfam:PF03372: Endonuclease/Exonuclease/phosphatase family; contains 4 WD-40 repeats (PF00400);similar to SP:Q01968 Inositol polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's oculocerebrorenal syndrome protein) (SP:Q01968) [Homo sapiens] Length = 1144 Score = 27.9 bits (59), Expect = 3.9 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +2 Query: 320 GARRVWTGSGCGRCRAWSM 376 G R VWTG G+ RAW M Sbjct: 229 GNRLVWTGHKDGKIRAWKM 247 >At2g02800.2 68415.m00225 protein kinase (APK2b) identical to protein kinase APK2b [Arabidopsis thaliana] gi|2852449|dbj|BAA24695 Length = 426 Score = 27.9 bits (59), Expect = 3.9 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -1 Query: 374 STRPGTGRIRFPSKPDAPRSSEPILIPKLRIQFA-DFPYLH 255 ST+PGTG ++ D+PR S ++ K +++ D P LH Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408 >At2g02800.1 68415.m00224 protein kinase (APK2b) identical to protein kinase APK2b [Arabidopsis thaliana] gi|2852449|dbj|BAA24695 Length = 426 Score = 27.9 bits (59), Expect = 3.9 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -1 Query: 374 STRPGTGRIRFPSKPDAPRSSEPILIPKLRIQFA-DFPYLH 255 ST+PGTG ++ D+PR S ++ K +++ D P LH Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408 >At5g22390.1 68418.m02612 expressed protein Length = 202 Score = 27.5 bits (58), Expect = 5.1 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 25 ERSGKSFLFCLSVRVPWNPIEG 90 + S KSFL LS PWNP +G Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38 >At1g16610.2 68414.m01990 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 407 Score = 27.5 bits (58), Expect = 5.1 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = -1 Query: 443 PERGSGFRPRGSPPFRGTTYAPASTRPGTGRIRFPSK--PDAPRSSEPILIP 294 P RGS R RGSP R + P R+R P + P RS PI P Sbjct: 283 PPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRP 334 >At1g16610.1 68414.m01989 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 414 Score = 27.5 bits (58), Expect = 5.1 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = -1 Query: 443 PERGSGFRPRGSPPFRGTTYAPASTRPGTGRIRFPSK--PDAPRSSEPILIP 294 P RGS R RGSP R + P R+R P + P RS PI P Sbjct: 290 PPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRP 341 >At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to DNA Helicase [Arabidopsis thaliana] GI:11121449 Length = 1188 Score = 27.5 bits (58), Expect = 5.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -1 Query: 188 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 99 H H +P+ S S S+RTPP R +SR E Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258 >At5g13650.2 68418.m01585 elongation factor family protein contains Pfam profiles: PF00009 elongation factor Tu GTP binding domain,PF00679 elongation factor G C-terminus, PF03144 elongation factor Tu domain 2 Length = 676 Score = 27.1 bits (57), Expect = 6.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 395 GTTYAPASTRPGTGRIRFPSKPDAPR 318 G ++A A +PG G +RFPS+ PR Sbjct: 30 GVSFASA-LKPGGGALRFPSRRPLPR 54 >At5g13650.1 68418.m01584 elongation factor family protein contains Pfam profiles: PF00009 elongation factor Tu GTP binding domain,PF00679 elongation factor G C-terminus, PF03144 elongation factor Tu domain 2 Length = 675 Score = 27.1 bits (57), Expect = 6.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 395 GTTYAPASTRPGTGRIRFPSKPDAPR 318 G ++A A +PG G +RFPS+ PR Sbjct: 30 GVSFASA-LKPGGGALRFPSRRPLPR 54 >At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein similar to SP|Q13144 Translation initiation factor eIF-2B epsilon subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens}; contains Pfam profile PF02020: eIF4-gamma/eIF5/eIF2-epsilon Length = 676 Score = 26.6 bits (56), Expect = 9.0 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -1 Query: 107 RSEPYLPSIGFHGTRTLRQKRK 42 R+ PY+P + F G RTL+ +R+ Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309 >At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to transcription factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 981 Score = 26.6 bits (56), Expect = 9.0 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = -2 Query: 253 ILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRR 125 I TR P G++RRD+ST PH +GH + Sbjct: 15 IQETRTRPQHPPRIAEGSHRRDLSTLRPHFLSGSSSGANGHTK 57 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,757,108 Number of Sequences: 28952 Number of extensions: 273801 Number of successful extensions: 957 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 905 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 956 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 848837888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -