Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L24
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07220.1 68414.m00768 expressed protein 40 7e-04
At1g76965.1 68414.m08961 glycine-rich protein 29 0.015
At1g47660.1 68414.m05295 hypothetical protein 29 1.3
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 2.2
At2g19150.1 68415.m02235 pectinesterase family protein contains ... 29 2.2
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 2.9
At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa... 28 3.9
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 3.9
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 3.9
At5g22390.1 68418.m02612 expressed protein 27 5.1
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 27 5.1
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 27 5.1
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 5.1
At5g13650.2 68418.m01585 elongation factor family protein contai... 27 6.8
At5g13650.1 68418.m01584 elongation factor family protein contai... 27 6.8
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 9.0
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 9.0
>At1g07220.1 68414.m00768 expressed protein
Length = 507
Score = 40.3 bits (90), Expect = 7e-04
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -1
Query: 353 RIRFPSKPDAPRSSEPILIPKLRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHV 177
R+R P K +PRS +L+ L + F F L Y +D + +T G+ EP H+
Sbjct: 6 RLRLPHK-SSPRSPSYLLLCVLALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HI 63
Query: 176 HPSPEFSRSAESIRTPPQMRCSSRSEPY 93
P FS + + + ++CS S PY
Sbjct: 64 FPRKSFSAATKHSQAYRILQCSYFSCPY 91
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect(2) = 0.015
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 365 PGTGRIRFPSKPDAPRSSEPILIPKLRIQFAD 270
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
Score = 25.4 bits (53), Expect(2) = 0.015
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 458 KIRGRPERGSGFRPRGSPPFRGTTYAPASTRPGTG 354
K+ GR G GF G+ P G+ Y PGTG
Sbjct: 23 KVSGRGG-GGGFVGSGNSPSIGSGYFGGGGNPGTG 56
>At1g47660.1 68414.m05295 hypothetical protein
Length = 275
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -1
Query: 419 PRGSPPFRGTTYAPASTRPGTGRIRFPSKPDAPRSSEPILIP 294
PR +PP R TT PA RP T +P+ P P + P+ +P
Sbjct: 26 PRAAPPARPTTPPPA--RPTTPPPVWPTTP--PPAGAPVAVP 63
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 151 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 17
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At2g19150.1 68415.m02235 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 339
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 121 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 222
I GG+ + ++ EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 146 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 48
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 4
WD-40 repeats (PF00400);similar to SP:Q01968 Inositol
polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's
oculocerebrorenal syndrome protein) (SP:Q01968) [Homo
sapiens]
Length = 1144
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 320 GARRVWTGSGCGRCRAWSM 376
G R VWTG G+ RAW M
Sbjct: 229 GNRLVWTGHKDGKIRAWKM 247
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 374 STRPGTGRIRFPSKPDAPRSSEPILIPKLRIQFA-DFPYLH 255
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 374 STRPGTGRIRFPSKPDAPRSSEPILIPKLRIQFA-DFPYLH 255
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 25 ERSGKSFLFCLSVRVPWNPIEG 90
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 443 PERGSGFRPRGSPPFRGTTYAPASTRPGTGRIRFPSK--PDAPRSSEPILIP 294
P RGS R RGSP R + P R+R P + P RS PI P
Sbjct: 283 PPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRP 334
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 443 PERGSGFRPRGSPPFRGTTYAPASTRPGTGRIRFPSK--PDAPRSSEPILIP 294
P RGS R RGSP R + P R+R P + P RS PI P
Sbjct: 290 PPRGSPRRIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRP 341
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 188 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 99
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 395 GTTYAPASTRPGTGRIRFPSKPDAPR 318
G ++A A +PG G +RFPS+ PR
Sbjct: 30 GVSFASA-LKPGGGALRFPSRRPLPR 54
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 395 GTTYAPASTRPGTGRIRFPSKPDAPR 318
G ++A A +PG G +RFPS+ PR
Sbjct: 30 GVSFASA-LKPGGGALRFPSRRPLPR 54
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 107 RSEPYLPSIGFHGTRTLRQKRK 42
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 253 ILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRR 125
I TR P G++RRD+ST PH +GH +
Sbjct: 15 IQETRTRPQHPPRIAEGSHRRDLSTLRPHFLSGSSSGANGHTK 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,757,108
Number of Sequences: 28952
Number of extensions: 273801
Number of successful extensions: 957
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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