Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L23
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   3.3  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   4.3  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   4.3  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    25   7.5  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   10.0 

>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -2

Query: 378 RCFVFFDCWTASVHDTRRIVLCILAFAIACTLTVVIRYVHIYNSPSRPV 232
           RC    DC  +   D RRI  C       C      RYVHI+ S + P+
Sbjct: 243 RCNKAEDCNLSHELDPRRIPACRYFLLGKCN-NPNCRYVHIHYSENAPI 290


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 302 NASMQRTIRRVSCTDAVQQSKKTKQRIASRQARMNANVPRNI 427
           NA+  R+  +VS T  +QQS  T         +  +N PR +
Sbjct: 742 NATHARSTSQVSHTQRLQQSISTSLERVKSNTKKESNSPRQV 783


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 381 IRCFVFFDCWTASVHDTRRIVLCILAFAIACTLTVVIRYVHI 256
           I  F FF+ WT +V    ++ +  LA  +  T+  + + V +
Sbjct: 134 IATFCFFETWTQAVAQCIKVTVIFLAQCVKVTVIFLAQCVKV 175


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 4   TLHFSHHYFIHSFVFRLPAAPQSAIMNRSLIILLVSCV 117
           TLH S  + + +FV  LPA  Q      +L  +LV+ +
Sbjct: 61  TLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVI 98


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 381 IRCFVFFDCWTASVHDTRRIVLCILAFAIACTLTVVIRYVHI 256
           I  F FF+ WT +V    ++ +  LA  +  T   + + V +
Sbjct: 133 IAIFCFFETWTQAVAQCIKVTVIFLAQCVKVTAISLAQCVKV 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,737
Number of Sequences: 5004
Number of extensions: 49038
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)