Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L23
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    31   0.82 
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     29   2.5  
05_02_0002 - 5476472-5476485,5486918-5488655                           29   3.3  

>08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,
            8779138-8779247,8781153-8781294,8782298-8782686,
            8782752-8782834,8783524-8785244,8785894-8786040,
            8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
 Frame = -1

Query: 496  YYCLRNTQRGPLYTVCVKNKRR-HNISRNISVHACLS------GSYPLFCLLRLLDGICT 338
            Y  + +TQ   L T  V NK++ +N + +I V+  L       GS  +F L+  + G  T
Sbjct: 1063 YVAVESTQ---LDTSEVNNKKQLNNYNHDIHVYEDLGRVCHECGSGEIFMLISFIQGFMT 1119

Query: 337  RHPSNRPLHT 308
            RH + RPL T
Sbjct: 1120 RHSTARPLGT 1129


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +1

Query: 352 PAVEEDKTTDSFQTSTHER*CSSKYYDVACSSRTPYREGP----FAYYVSNNSDR 504
           PAV+E+K++ S Q+  + + CSS++     SS+   R        AY  S +S R
Sbjct: 500 PAVKEEKSSSSSQSLNNSQSCSSEHAKTIGSSKEDARSSTAASGVAYKTSGSSSR 554


>05_02_0002 - 5476472-5476485,5486918-5488655
          Length = 583

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -1

Query: 508 LSGHYYCLR----NTQRGPLYTVC--VKNKRRHNISRNISVHACLSGSYPLF 371
           + G +Y LR    N QRG +   C   KN++ +++SR I  H   SG  P +
Sbjct: 16  IDGVHYFLRVAEANRQRGFICCPCNKCKNQKEYSVSRTIHFHLFESGFMPSY 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,370,558
Number of Sequences: 37544
Number of extensions: 323291
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)