Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L23
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19580.1 68415.m02287 senescence-associated protein-related s...    30   1.2  
At1g54330.1 68414.m06194 no apical meristem (NAM) family protein...    28   4.9  
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    27   6.4  

>At2g19580.1 68415.m02287 senescence-associated protein-related
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855; contains a
           transmembrane 4 family signature; rare (GC) splice donor
           consensus found instead of (GT) at intron 2.
          Length = 270

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = +1

Query: 103 LVSCVLAAAMVPRSRRSVTTNNENSSTANIK-----ICAPQTPCAWSVYRPTGRIIDMNI 267
           L +C+    + P+  +   T ++  S++ I       C P T C ++   PT   + +N 
Sbjct: 134 LRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYNFVNPT---LWLNP 190

Query: 268 TNNYCECASDSECQYAEDDSTGVVYRC 348
           TN     A+D++C    +D + + Y C
Sbjct: 191 TN----MAADADCYLWSNDQSQLCYNC 213


>At1g54330.1 68414.m06194 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM protein GI:1279639 from [Petunia hybrida]
          Length = 298

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 344 DAVQQSKKTKQRIASRQARMNANVPRNIMTSLVLHAHRIERAP 472
           D   +SKK K  +           P  + T+ V+H +R+  AP
Sbjct: 92  DRTVESKKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRLTHAP 134


>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +1

Query: 367 DKTTDSFQTSTHER*CSSKY--YDVACSS 447
           D  TD F    H   C SKY  YD  CSS
Sbjct: 371 DVYTDGFIYKCHHEDCESKYINYDARCSS 399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,207,370
Number of Sequences: 28952
Number of extensions: 253111
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)