BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L23 (559 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g19580.1 68415.m02287 senescence-associated protein-related s... 30 1.2 At1g54330.1 68414.m06194 no apical meristem (NAM) family protein... 28 4.9 At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 27 6.4 >At2g19580.1 68415.m02287 senescence-associated protein-related similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855; contains a transmembrane 4 family signature; rare (GC) splice donor consensus found instead of (GT) at intron 2. Length = 270 Score = 29.9 bits (64), Expect = 1.2 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +1 Query: 103 LVSCVLAAAMVPRSRRSVTTNNENSSTANIK-----ICAPQTPCAWSVYRPTGRIIDMNI 267 L +C+ + P+ + T ++ S++ I C P T C ++ PT + +N Sbjct: 134 LRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYNFVNPT---LWLNP 190 Query: 268 TNNYCECASDSECQYAEDDSTGVVYRC 348 TN A+D++C +D + + Y C Sbjct: 191 TN----MAADADCYLWSNDQSQLCYNC 213 >At1g54330.1 68414.m06194 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAM protein GI:1279639 from [Petunia hybrida] Length = 298 Score = 27.9 bits (59), Expect = 4.9 Identities = 12/43 (27%), Positives = 19/43 (44%) Frame = +2 Query: 344 DAVQQSKKTKQRIASRQARMNANVPRNIMTSLVLHAHRIERAP 472 D +SKK K + P + T+ V+H +R+ AP Sbjct: 92 DRTVESKKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRLTHAP 134 >At5g29624.1 68418.m03640 DC1 domain-containing protein contains Pfam PF03107: DC1 domain Length = 488 Score = 27.5 bits (58), Expect = 6.4 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%) Frame = +1 Query: 367 DKTTDSFQTSTHER*CSSKY--YDVACSS 447 D TD F H C SKY YD CSS Sbjct: 371 DVYTDGFIYKCHHEDCESKYINYDARCSS 399 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,207,370 Number of Sequences: 28952 Number of extensions: 253111 Number of successful extensions: 602 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 589 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 602 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1062855648 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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