Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L22
         (490 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0F377 Cluster: TraG; n=1; Mariprofundus ferrooxydans P...    33   4.5  
UniRef50_A5AIK6 Cluster: Putative uncharacterized protein; n=1; ...    32   6.0  

>UniRef50_Q0F377 Cluster: TraG; n=1; Mariprofundus ferrooxydans
           PV-1|Rep: TraG - Mariprofundus ferrooxydans PV-1
          Length = 974

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 136 FSIVSFLWVIDTLILFRRHSLQHWLLLIKIMLAIFF 243
           F I+S  WV+  + + RR    HW ++  +M  IFF
Sbjct: 38  FGILSLFWVVIEMGVLRRTINWHWFVMFMLMFNIFF 73


>UniRef50_A5AIK6 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 728

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 303 SVVIFFSLHLSKTLCSTKIALSYKFRSYSITTFYHVYILNVH*TVSQSISNL 458
           ++++  ++     L    I  S KFRS+S TT +HV +L+   T+  S+ +L
Sbjct: 592 NIILVIAIGALGLLVGWLIEFSTKFRSFSFTTGFHVNVLHRWQTIRDSLRSL 643


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 420,386,959
Number of Sequences: 1657284
Number of extensions: 7310529
Number of successful extensions: 14659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14655
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)