Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L22
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    26   2.7  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    26   3.5  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   8.1  

>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 136 FSIVSFLWVIDTLILFRRHSLQHWLLLIKIMLAI 237
           FS+++ LW + T+  F  HS++  L++++  +A+
Sbjct: 100 FSVMNILWGLMTIFSFAVHSVRA-LMILRFFMAV 132


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 343 YVAQK*LFPINFARIRLQLFTMFIFLMFIKLSAK 444
           ++ QK L PIN   + ++ +T+F+ L     S+K
Sbjct: 334 FLRQKKLIPINCECLNIKAYTLFVSLRKYSFSSK 367


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 237 FFFLTAL*AN-C*EIVSKTCP*RSVVIFFSLHLSKTLCSTKIALSYKFRSYSITTFY 404
           FFF+  +  N C   V   CP    ++ FS  ++    ST IA     R YS+  F+
Sbjct: 491 FFFIIPIAKNVCYLWVFLYCPFTPFLVLFSNIVNGKEPSTDIAFEDLNRMYSVNRFF 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,880
Number of Sequences: 5004
Number of extensions: 35616
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)