Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L22
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          27   6.3  
SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)                  27   8.3  
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 206 QCCNECRLNSINVSITHRNETIENDGKLA 120
           QCC++ RL+   ++IT     ++ DGK++
Sbjct: 36  QCCSDLRLSEEKLAITFNELDLDGDGKIS 64


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 377 SLVFDYNFLPCLYS*CSLNC 436
           S++ DY+FLPC +  C   C
Sbjct: 70  SVIKDYSFLPCCFKVCHRTC 89


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 377 SLVFDYNFLPCLYS*CSLNC 436
           S++ DY+FLPC +  C   C
Sbjct: 70  SVIKDYSFLPCCFKVCHRTC 89


>SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)
          Length = 316

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 160 PIEMRQ*KTMESWRKRQVSAHGVKKENIIKDYAVLFRNVV 41
           PI   Q  + E W  R +   GVK+ +++  Y  L R+V+
Sbjct: 219 PILQSQIHSEELWSMRLLKKSGVKELDLVTVYCSLIRSVI 258


>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 29  RSSIHYIPKQNCVILNNILFLNPMSTNLAFTPAFHRFL 142
           R + +  P+ N   +NNI++ NP  +    T   HRFL
Sbjct: 66  RCTTNQTPQANVRTVNNIIWYNPPFSKNTSTNIGHRFL 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,938,326
Number of Sequences: 59808
Number of extensions: 222841
Number of successful extensions: 502
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)