Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L19
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 65 4e-11
04_04_1078 - 30655212-30655289,30655614-30655811,30655916-306560... 61 6e-10
01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934... 46 1e-05
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666... 44 8e-05
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 28 4.0
01_03_0011 + 11630506-11630853 28 5.3
02_05_0118 - 25991356-25991686,25991797-25992092,25992405-259931... 27 7.1
02_05_0113 - 25941189-25941519,25941630-25941925,25942238-259429... 27 7.1
11_04_0059 + 12981201-12981290,12981548-12981739 27 9.3
01_06_1835 + 40223645-40224148,40224893-40225189,40225344-402254... 27 9.3
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 64.9 bits (151), Expect = 4e-11
Identities = 38/97 (39%), Positives = 60/97 (61%), Gaps = 11/97 (11%)
Frame = +2
Query: 137 EIKTLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTG----- 301
++ +L ++G EF G W++E+L F +VD +++FE IR +GGL+S + L
Sbjct: 107 KVDSLVVLGNLTEFERGVLWLSENLTF-DVDARINLFECNIRLLGGLISGHILAKEHSSH 165
Query: 302 --DTVFRDKAVEVADAL----LPAFQTPTGLPYALIN 394
D ++D+ + +A+ L LPAF+TPTGLPYA IN
Sbjct: 166 LKDGPYQDQLLHLAENLGSRFLPAFETPTGLPYAWIN 202
>04_04_1078 -
30655212-30655289,30655614-30655811,30655916-30656086,
30656172-30656252,30656464-30656565,30656671-30656779,
30656900-30656965,30657566-30657630,30658386-30658475,
30658952-30659123,30659831-30659943,30660046-30660219,
30660300-30660347,30662041-30662205
Length = 543
Score = 60.9 bits (141), Expect = 6e-10
Identities = 35/85 (41%), Positives = 47/85 (55%)
Frame = +2
Query: 140 IKTLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRD 319
+ TLY+MGL DEF+ R+ +GGLLS Y L+GD VF +
Sbjct: 150 LDTLYIMGLKDEFQRARE-----------------------VVGGLLSAYDLSGDKVFLE 186
Query: 320 KAVEVADALLPAFQTPTGLPYALIN 394
KA ++ D LLPA+ TP+G+PY IN
Sbjct: 187 KAKDITDRLLPAWDTPSGIPYNRIN 211
>01_06_0881 +
32692345-32692497,32693167-32693286,32693382-32693474,
32694197-32694283,32696052-32696063,32696553-32696625,
32697073-32697182,32697608-32697658,32698154-32698242,
32698518-32698599,32698680-32698793,32699015-32699094,
32699749-32699884,32700210-32700280,32700363-32700457,
32700467-32700597,32701009-32701398
Length = 628
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = +2
Query: 140 IKTLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGD 304
+ TL L+G + F +WV +++ F +++ +SVFET IR +GGLLS + + D
Sbjct: 95 LDTLALLGDKERFDAAVEWVGKNVRF-DINKTVSVFETNIRILGGLLSAHLIASD 148
>05_02_0107 -
6667944-6668214,6668376-6668524,6668654-6668851,
6668989-6669250,6669378-6670327,6670907-6671022,
6671121-6671280
Length = 701
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 140 IKTLYLMGLNDEFREGRDWVAEHLHFNEVDT-ELSVFETTIRFIGGLLSCYSLTG 301
+ T +MG +D E W+ ++L + ++++FETTIR +GGLLS Y L+G
Sbjct: 241 LDTAIIMGADDVVSEASKWIEDNLMKKLSEKGQVNLFETTIRVLGGLLSAYHLSG 295
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 356 FQTPTGLPYALINPSTKASKQYH----WAGPNKYTNPNWVLFIWNSLTLVTSRA 505
F PT + + P + Y W PN T P V+F ++ L ++T+ A
Sbjct: 253 FDAPTAVMQTAVTPRNASGNIYFFWEPWPQPNDPTPPYTVIFHFSELEILTNNA 306
>01_03_0011 + 11630506-11630853
Length = 115
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 201 PNICISTKSIRSYRYSRQPSGSSVDSCR 284
P I ++ SYR+ RQPS SS D R
Sbjct: 56 PIIVNHYRACNSYRFHRQPSSSSTDRLR 83
>02_05_0118 -
25991356-25991686,25991797-25992092,25992405-25993109,
25993197-25993298,25993519-25993846,25994337-25994461,
25994555-25994628,25995110-25995191,25995278-25995391,
25995475-25995575,25995663-25995752,25996316-25996562
Length = 864
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 251 TTIRFIGGLLSCYSLTGDTVFRDKAVE 331
+ +R IG SC SLTG T+F D ++
Sbjct: 542 SNLRVIGRSRSCRSLTGSTMFDDMEMD 568
>02_05_0113 -
25941189-25941519,25941630-25941925,25942238-25942942,
25943030-25943131,25943352-25943679,25944170-25944294,
25944388-25944453,25945046-25945109,25945739-25945821,
25945917-25945943
Length = 708
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 251 TTIRFIGGLLSCYSLTGDTVFRDKAVE 331
+ +R IG SC SLTG T+F D ++
Sbjct: 386 SNLRVIGRSRSCRSLTGSTMFDDMEMD 412
>11_04_0059 + 12981201-12981290,12981548-12981739
Length = 93
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 346 KCVGHFHCFIPEHCVTGQRI 287
K V +F C +P HC TG ++
Sbjct: 69 KGVNYFICGVPGHCATGMKL 88
>01_06_1835 +
40223645-40224148,40224893-40225189,40225344-40225439,
40225595-40225748,40225773-40226011
Length = 429
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 216 STKSIRSYRYSRQPSGSSVDSCRVIR*PVTQC 311
ST+ +RS ++ P+G + SCR+ V+ C
Sbjct: 300 STEGMRSSKFCLHPAGDTPSSCRLFDAIVSHC 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,498,949
Number of Sequences: 37544
Number of extensions: 246528
Number of successful extensions: 600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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