BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L19 (529 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 1e-27 SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 73 2e-13 SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05 SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24) 30 1.4 SB_51957| Best HMM Match : Synaphin (HMM E-Value=0.0055) 29 1.8 SB_43462| Best HMM Match : VWA (HMM E-Value=5.8e-22) 29 2.4 SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9) 29 3.1 SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1 SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7) 28 5.5 >SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 555 Score = 119 bits (287), Expect = 1e-27 Identities = 52/97 (53%), Positives = 76/97 (78%) Frame = +2 Query: 140 IKTLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRD 319 + TL LMG+N+EF GR WVA++L+FN+ +++SVFE TIRF+GGLLS Y+L+G+ VF+ Sbjct: 219 LSTLKLMGMNEEFERGRKWVAQNLNFNQA-SDISVFEMTIRFLGGLLSAYALSGEEVFKV 277 Query: 320 KAVEVADALLPAFQTPTGLPYALINPSTKASKQYHWA 430 KA E+ D LLPAF TPTG+P+A++N ++ + + WA Sbjct: 278 KAKELGDKLLPAFNTPTGIPWAMVNLASGSGHNWGWA 314 Score = 42.7 bits (96), Expect = 2e-04 Identities = 18/26 (69%), Positives = 20/26 (76%) Frame = +1 Query: 451 SELGTLHLEFTYLSDVTGRDVYRKKV 528 +E GTLHLEF YLS +TG VY KKV Sbjct: 322 AEFGTLHLEFVYLSHITGNQVYAKKV 347 >SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) Length = 758 Score = 72.5 bits (170), Expect = 2e-13 Identities = 33/68 (48%), Positives = 48/68 (70%) Frame = +2 Query: 140 IKTLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRD 319 + T+ L+ L DEFRE RDWVA L F++ + ++++FE TIR +GGLLS Y L+ D +F + Sbjct: 396 LDTMLLLNLKDEFREARDWVANSLSFDK-NVDVNLFEVTIRVLGGLLSAYHLSNDDIFLN 454 Query: 320 KAVEVADA 343 KAV +A Sbjct: 455 KAVSTINA 462 Score = 35.5 bits (78), Expect = 0.027 Identities = 15/63 (23%), Positives = 32/63 (50%) Frame = +2 Query: 308 VFRDKAVEVADALLPAFQTPTGLPYALINPSTKASKQYHWAGPNKYTNPNWVLFIWNSLT 487 + + + VE+ D LLP F + +G+P++ +N T+ W + + + + + L+ Sbjct: 521 MLKTRGVELGDRLLPCFNSQSGIPFSDVNLMTRQVHPPRWGPDSSVSEVSTIQLEFRDLS 580 Query: 488 LVT 496 VT Sbjct: 581 YVT 583 Score = 30.3 bits (65), Expect = 1.0 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 451 SELGTLHLEFTYLSDVTGRDVYRKKV 528 SE+ T+ LEF LS VTG D Y++ V Sbjct: 567 SEVSTIQLEFRDLSYVTGNDKYKQAV 592 >SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 505 Score = 44.8 bits (101), Expect = 4e-05 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 15/98 (15%) Frame = +2 Query: 146 TLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTV--FRD 319 TL +MG + EF+ V +++HF+ T + VFE IR +G LLS + + D + F D Sbjct: 167 TLAVMGNSTEFKLAVQHVIDNVHFDRKST-VQVFEANIRVLGSLLSAHMIIKDPLQPFGD 225 Query: 320 K------------AVEVADALLPAF-QTPTGLPYALIN 394 A ++A+ L+ AF ++PTG+PY +N Sbjct: 226 MSPDDYDDELLTLAHDLANRLVDAFNKSPTGIPYPRVN 263 >SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24) Length = 257 Score = 29.9 bits (64), Expect = 1.4 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 350 PAFQTPTGLPYALIN 394 PAF TPTG+PY +N Sbjct: 8 PAFDTPTGMPYGTVN 22 >SB_51957| Best HMM Match : Synaphin (HMM E-Value=0.0055) Length = 121 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = +3 Query: 111 LNVINKLMLKSKLST*WDSMMSSERDETGSPNICISTKSIRSYR 242 +N + K ++ +KLS+ S+ ++DET S + +S+K +R R Sbjct: 1 MNPLTKALVTNKLSSVTKSIGLDDKDETTSEDAGVSSKEMRKMR 44 >SB_43462| Best HMM Match : VWA (HMM E-Value=5.8e-22) Length = 320 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -1 Query: 319 IPEHCVTGQRITRQESTDEPDGCLEYR*LR 230 +P H +T QRI R DEPD +R LR Sbjct: 90 VPPHMITAQRIQRFFIIDEPDDPSTHRILR 119 >SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9) Length = 456 Score = 28.7 bits (61), Expect = 3.1 Identities = 13/31 (41%), Positives = 23/31 (74%) Frame = +3 Query: 42 NNKRIYLKSVSNLVFHR*YYFKLLNVINKLM 134 +N RI L++ +NLVF++ +Y ++L + KLM Sbjct: 395 DNARIVLEN-NNLVFNKKHYLQVLGIFRKLM 424 >SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1784 Score = 28.3 bits (60), Expect = 4.1 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -2 Query: 492 TKVSEFQMKSTQFGLVYLLGPAQWYCLLALVEGLMR 385 T+ EF +++++G L + YCL +E LMR Sbjct: 241 TEFVEFSPQTSRYGFTLLAAKIRLYCLRTSIEPLMR 276 >SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7) Length = 357 Score = 27.9 bits (59), Expect = 5.5 Identities = 9/33 (27%), Positives = 20/33 (60%) Frame = +2 Query: 143 KTLYLMGLNDEFREGRDWVAEHLHFNEVDTELS 241 KT++ G + F++G+ W+ + + E+D +S Sbjct: 185 KTIFFSGAREIFKQGQRWLTQAKEYYELDGHVS 217 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,731,459 Number of Sequences: 59808 Number of extensions: 293540 Number of successful extensions: 676 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 643 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 671 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1197191618 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -