Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L19
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 1e-27
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 73 2e-13
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24) 30 1.4
SB_51957| Best HMM Match : Synaphin (HMM E-Value=0.0055) 29 1.8
SB_43462| Best HMM Match : VWA (HMM E-Value=5.8e-22) 29 2.4
SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9) 29 3.1
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7) 28 5.5
>SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 119 bits (287), Expect = 1e-27
Identities = 52/97 (53%), Positives = 76/97 (78%)
Frame = +2
Query: 140 IKTLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRD 319
+ TL LMG+N+EF GR WVA++L+FN+ +++SVFE TIRF+GGLLS Y+L+G+ VF+
Sbjct: 219 LSTLKLMGMNEEFERGRKWVAQNLNFNQA-SDISVFEMTIRFLGGLLSAYALSGEEVFKV 277
Query: 320 KAVEVADALLPAFQTPTGLPYALINPSTKASKQYHWA 430
KA E+ D LLPAF TPTG+P+A++N ++ + + WA
Sbjct: 278 KAKELGDKLLPAFNTPTGIPWAMVNLASGSGHNWGWA 314
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +1
Query: 451 SELGTLHLEFTYLSDVTGRDVYRKKV 528
+E GTLHLEF YLS +TG VY KKV
Sbjct: 322 AEFGTLHLEFVYLSHITGNQVYAKKV 347
>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
Length = 758
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/68 (48%), Positives = 48/68 (70%)
Frame = +2
Query: 140 IKTLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRD 319
+ T+ L+ L DEFRE RDWVA L F++ + ++++FE TIR +GGLLS Y L+ D +F +
Sbjct: 396 LDTMLLLNLKDEFREARDWVANSLSFDK-NVDVNLFEVTIRVLGGLLSAYHLSNDDIFLN 454
Query: 320 KAVEVADA 343
KAV +A
Sbjct: 455 KAVSTINA 462
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +2
Query: 308 VFRDKAVEVADALLPAFQTPTGLPYALINPSTKASKQYHWAGPNKYTNPNWVLFIWNSLT 487
+ + + VE+ D LLP F + +G+P++ +N T+ W + + + + + L+
Sbjct: 521 MLKTRGVELGDRLLPCFNSQSGIPFSDVNLMTRQVHPPRWGPDSSVSEVSTIQLEFRDLS 580
Query: 488 LVT 496
VT
Sbjct: 581 YVT 583
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 451 SELGTLHLEFTYLSDVTGRDVYRKKV 528
SE+ T+ LEF LS VTG D Y++ V
Sbjct: 567 SEVSTIQLEFRDLSYVTGNDKYKQAV 592
>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 44.8 bits (101), Expect = 4e-05
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Frame = +2
Query: 146 TLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTV--FRD 319
TL +MG + EF+ V +++HF+ T + VFE IR +G LLS + + D + F D
Sbjct: 167 TLAVMGNSTEFKLAVQHVIDNVHFDRKST-VQVFEANIRVLGSLLSAHMIIKDPLQPFGD 225
Query: 320 K------------AVEVADALLPAF-QTPTGLPYALIN 394
A ++A+ L+ AF ++PTG+PY +N
Sbjct: 226 MSPDDYDDELLTLAHDLANRLVDAFNKSPTGIPYPRVN 263
>SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24)
Length = 257
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 350 PAFQTPTGLPYALIN 394
PAF TPTG+PY +N
Sbjct: 8 PAFDTPTGMPYGTVN 22
>SB_51957| Best HMM Match : Synaphin (HMM E-Value=0.0055)
Length = 121
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +3
Query: 111 LNVINKLMLKSKLST*WDSMMSSERDETGSPNICISTKSIRSYR 242
+N + K ++ +KLS+ S+ ++DET S + +S+K +R R
Sbjct: 1 MNPLTKALVTNKLSSVTKSIGLDDKDETTSEDAGVSSKEMRKMR 44
>SB_43462| Best HMM Match : VWA (HMM E-Value=5.8e-22)
Length = 320
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 319 IPEHCVTGQRITRQESTDEPDGCLEYR*LR 230
+P H +T QRI R DEPD +R LR
Sbjct: 90 VPPHMITAQRIQRFFIIDEPDDPSTHRILR 119
>SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9)
Length = 456
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 42 NNKRIYLKSVSNLVFHR*YYFKLLNVINKLM 134
+N RI L++ +NLVF++ +Y ++L + KLM
Sbjct: 395 DNARIVLEN-NNLVFNKKHYLQVLGIFRKLM 424
>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1784
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 492 TKVSEFQMKSTQFGLVYLLGPAQWYCLLALVEGLMR 385
T+ EF +++++G L + YCL +E LMR
Sbjct: 241 TEFVEFSPQTSRYGFTLLAAKIRLYCLRTSIEPLMR 276
>SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7)
Length = 357
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 143 KTLYLMGLNDEFREGRDWVAEHLHFNEVDTELS 241
KT++ G + F++G+ W+ + + E+D +S
Sbjct: 185 KTIFFSGAREIFKQGQRWLTQAKEYYELDGHVS 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,731,459
Number of Sequences: 59808
Number of extensions: 293540
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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