Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L18
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409...    31   0.83 
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906...    30   1.5  
05_03_0033 - 7585267-7586028                                           28   4.4  
07_03_0632 - 20112297-20116562                                         28   5.9  

>12_02_0370 +
           18139557-18140469,18140561-18140704,18140804-18140956,
           18141032-18141147,18141231-18141398,18142110-18142334,
           18142458-18142577
          Length = 612

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 58  EPQPEERPAVRSSAAPPKVDDSKDFPSLS*TCSEP 162
           +PQPE +PA  S   PP+   S   P+ S T  +P
Sbjct: 74  QPQPEPQPAAPSQPPPPQEQPSPPPPASSNTTQQP 108


>07_03_0482 +
           18589573-18589728,18589889-18590065,18590518-18590688,
           18590913-18591029,18591614-18591742,18592210-18592311,
           18592412-18592498,18592585-18592638,18594880-18595016,
           18595181-18595235,18596133-18596188,18596275-18596334,
           18596442-18596529,18596634-18597371,18597451-18597511,
           18598301-18598403,18599180-18599311,18599393-18599477
          Length = 835

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 441 YCSSEFKIKTYNNPPPLVNFTWHVTT 364
           YCSS  +   YN+P  +++FT HV T
Sbjct: 380 YCSSTTRFPRYNDPYKILDFTDHVWT 405


>05_03_0033 - 7585267-7586028
          Length = 253

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 58  EPQPEERPAVRSSAAPPKVDDSKDFP 135
           EPQPE +P  +  +AP K   S  +P
Sbjct: 228 EPQPESKPEPKPESAPKKETPSSAYP 253


>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 225 NNGRYNI*FVTLSYFEKGEDRRLTASLAER 136
           + G+YN+    LS F++G+ + L ASL E+
Sbjct: 868 SRGKYNLYGKELSQFDRGQKQPLQASLVEK 897


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,011,636
Number of Sequences: 37544
Number of extensions: 232962
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)