Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L18
(560 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isofo... 29 8.5
AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isofo... 29 8.5
AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isofo... 29 8.5
AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-link... 29 8.5
AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-link... 29 8.5
AL133274-3|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-link... 29 8.5
AL133274-2|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-link... 29 8.5
AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-link... 29 8.5
AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-link... 29 8.5
AL121869-4|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-link... 29 8.5
AL121869-3|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-link... 29 8.5
AJ564946-1|CAD92425.1| 177|Homo sapiens protocadherin protein. 29 8.5
AJ564945-1|CAD92424.1| 224|Homo sapiens protocadherin protein. 29 8.5
AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein. 29 8.5
AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein. 29 8.5
AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein. 29 8.5
AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein. 29 8.5
AB037747-1|BAA92564.1| 424|Homo sapiens KIAA1326 protein protein. 29 8.5
>AY861434-1|AAX56124.1| 1329|Homo sapiens protocadherin 11X isoform 6
protein.
Length = 1329
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1190 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1228
>AY861433-1|AAX56123.1| 1310|Homo sapiens protocadherin 11X isoform 7
protein.
Length = 1310
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1171 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1209
>AY861432-1|AAX56122.1| 1339|Homo sapiens protocadherin 11X isoform 8
protein.
Length = 1339
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1200 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1238
>AL133321-2|CAI41436.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1198 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1236
>AL133321-1|CAI41435.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1208 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1246
>AL133274-3|CAI41631.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1198 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1236
>AL133274-2|CAI41629.1| 1310|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1310
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1171 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1209
>AL133274-1|CAI41630.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1208 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1246
>AL121869-5|CAI41414.1| 1337|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1337
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1198 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1236
>AL121869-4|CAI41412.1| 1310|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1310
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1171 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1209
>AL121869-3|CAI41413.1| 1347|Homo sapiens protocadherin 11 X-linked
protein.
Length = 1347
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1208 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1246
>AJ564946-1|CAD92425.1| 177|Homo sapiens protocadherin protein.
Length = 177
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 38 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 76
>AJ564945-1|CAD92424.1| 224|Homo sapiens protocadherin protein.
Length = 224
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 85 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 123
>AF332219-1|AAK13471.1| 1337|Homo sapiens protocadherin 11 protein.
Length = 1337
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1198 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1236
>AF332218-1|AAK13470.1| 1347|Homo sapiens protocadherin 11 protein.
Length = 1347
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1208 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1246
>AF217288-1|AAK82656.1| 1310|Homo sapiens protocadherin-S protein.
Length = 1310
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1171 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1209
>AF206516-1|AAK82655.1| 1347|Homo sapiens protocadherin-S protein.
Length = 1347
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 1208 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 1246
>AB037747-1|BAA92564.1| 424|Homo sapiens KIAA1326 protein protein.
Length = 424
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 121 CHPPSEVQHSSALQDVPP---AGALHAFPDRVRAHGLCHA 11
CH P +Q SAL PP A ALH P +A LC++
Sbjct: 285 CHSPPPIQ-VSALHHSPPLVQATALHHSPPSAQASALCYS 323
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,190,463
Number of Sequences: 237096
Number of extensions: 1301295
Number of successful extensions: 2966
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2966
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -