Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L18
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    27   6.5  
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit...    27   6.5  
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit...    27   6.5  
At5g62070.1 68418.m07790 calmodulin-binding family protein conta...    27   8.6  

>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 181 RKGRRSKAHCKSS*ERGSPCCHPPSEVQHSSALQDVPPAGALHA 50
           R+ RRS++  K   ER +    P    Q  S     PPA A+ A
Sbjct: 142 RRSRRSRSRSKDRSERRTRSRSPSKSKQRVSGFDMAPPASAMLA 185


>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 542

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 181 RKGRRSKAHCKSS*ERGSPCCHPPSEVQHSSALQDVPPAGALHA 50
           R+ RRS++  K   ER +    P    Q  S     PPA A+ A
Sbjct: 142 RRSRRSRSRSKDRSERRTRSRSPSKSKQRVSGFDMAPPASAMLA 185


>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 573

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 181 RKGRRSKAHCKSS*ERGSPCCHPPSEVQHSSALQDVPPAGALHA 50
           R+ RRS++  K   ER +    P    Q  S     PPA A+ A
Sbjct: 142 RRSRRSRSRSKDRSERRTRSRSPSKSKQRVSGFDMAPPASAMLA 185


>At5g62070.1 68418.m07790 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 403

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 391 SEFHMACDHKHLSSYHSSFKANYIILKTKV 302
           SE+   C++ + S YH ++ AN    K KV
Sbjct: 302 SEYSWGCNNYYYSGYHPNYMANTESYKAKV 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,597,208
Number of Sequences: 28952
Number of extensions: 191879
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)