Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L17
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.34
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 3.2
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 26 3.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.2
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 4.2
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.6
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 7.3
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 25 7.3
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 7.3
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 25 9.7
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 9.7
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.5 bits (63), Expect = 0.34
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +3
Query: 69 TSDEEAKVLRSDYS--QSPEGDFSYAYETENGISGQAQGKVKSLGKDEIALEVSGSSQYK 242
T E+ RS+ + + + D +A E E S + + S E + + + Y+
Sbjct: 900 TLTRESPAFRSEEAVVEVADEDHPHASEAERAHSYSNRKQASSESSPES--QSTHYNDYE 957
Query: 243 SPEGEVVSLTYIADENGYQPQGSHLPTTPAPLPV 344
E +V T DE+G+Q Q + P+PV
Sbjct: 958 GTEDNIVRQTTTVDEDGHQEQTTSTTKVAHPIPV 991
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 364 ARRICSGTGRGA-GVVGK-CEPWGWYPFSSAMYVRETTSPSGDLYWL 230
AR + G G GA ++ K C P W + A+Y R +LY+L
Sbjct: 1594 ARNLRGGLGAGAVEMIEKLCIPESWLNEAKALYARYVGDHLNELYFL 1640
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 219 VSGSSQYKSPEGEVVSLTYIADENGYQPQGSHLPTTPAPLP 341
V+ SS + G SLT+ A GY P T P P P
Sbjct: 139 VAFSSSWHGVTGGAASLTFAAARRGYGPALPGSYTIPEPNP 179
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +3
Query: 228 SSQYKSPEGEVVSLTYIADENGYQPQGSHLPTTPAPLP-VPEHILRALAYIAEHPYKEPV 404
S Y SP +S Y Y P T+PA +P P + + +Y P P
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT 1595
Query: 405 KP 410
P
Sbjct: 1596 SP 1597
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 198 KDEIALEVSGSSQYKSPEGEVVSLTYIADENGYQPQGSHLPTTPAPLPVPE 350
+DE+ + + + + P GE+V+ IA+E S PT P P+ E
Sbjct: 361 QDELGIAENDDAMFPKPPGELVAPISIAEEE--PTIDSKSPTLPEHNPLSE 409
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 126 DFSYAYETENGISGQAQGKVKSLGKDEIALE 218
D +Y YET + ++GK + K E ALE
Sbjct: 176 DLTYDYETLKANADDSEGKQTLVSKREAALE 206
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 7.3
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Frame = +3
Query: 63 YATSDEEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKDEIAL-EVSGSSQY 239
Y D+ + R + S NG G + DE+++ S S
Sbjct: 588 YGLKDDAEEEERETKEAEKIRELSVRLNGGNGFPGHVHNNRED---DEVSIASTSSKSNV 644
Query: 240 KSPEGEVV--SLTYIADENGYQPQGSHLPTTPAPLP 341
+ + ++ SL + P S LPT P PLP
Sbjct: 645 EMEDTRLLPASLELANTQGASNPPTSALPTVPVPLP 680
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 254 TFGRFVLAGPRNFESYFILAKRFYFSLGLATDAILCLVCIAKITFWT 114
T G ++ G + F + YFS+ + I C C A+ITF T
Sbjct: 50 TCGEYIYKG-KKFNARKEKTGEKYFSIDILRFYIRCTRCAAEITFIT 95
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 117 PEGDFSYAYETENGISGQAQGKVKSLG 197
P D S +YE NG Q+ V SLG
Sbjct: 540 PSQDKSTSYEVPNGTENQSPRPVTSLG 566
>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 158
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 224 WVQPIQISRR*GCLSDIHRRRERIPTPGFTLADHPRTSAGTRAYPPCS 367
W +P+ + D RRRE +PTP + P SA A+ P S
Sbjct: 54 WYEPVD-----SAMIDQRRRREDLPTP-----ERPEASAQQHAFFPGS 91
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.7
Identities = 22/78 (28%), Positives = 29/78 (37%)
Frame = +3
Query: 117 PEGDFSYAYETENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGEVVSLTYIADENGY 296
P D+ E E G+ G +KS EIAL +S + VV +T AD
Sbjct: 207 PYCDYVIGNEAEILSYGENHG-IKSTDVQEIALALSSVEKVNKKRTRVVVITQGADATIV 265
Query: 297 QPQGSHLPTTPAPLPVPE 350
G P +P E
Sbjct: 266 AKDGKVTTYKPNRVPSEE 283
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 83 FFITGGINVADNTESDDQGP 24
+F G N + ESDD+GP
Sbjct: 241 YFFLGADNQEEEEESDDEGP 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,540
Number of Sequences: 5004
Number of extensions: 47457
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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