Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L17
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36937| Best HMM Match : DUF11 (HMM E-Value=2.5) 33 0.20
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 30 1.4
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 29 3.3
SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_29690| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0) 28 5.8
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 28 5.8
SB_19362| Best HMM Match : M (HMM E-Value=0.0014) 28 5.8
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 27 7.6
>SB_36937| Best HMM Match : DUF11 (HMM E-Value=2.5)
Length = 116
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 129 FSYAYETENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGEVVSLTYIADENGYQP 302
F Y E++N + QA + S D + E+S + +K+ G VS++Y GY P
Sbjct: 51 FEYTAESDNDRASQALKVILSPPPDLVVSEISTNGTFKT--GNTVSVSYRVTNRGYGP 106
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 334 GAGVVGKCEPWGWYPFSSAMYVRETTSPSGDLYWLDPETSRAISSLP 194
G + G+C P+ YP SA Y T + L P T R I +LP
Sbjct: 127 GGPMAGQCAPYRLYPTQSAPYRLYPTQTVRTIQTL-PNTVRTIQTLP 172
>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1622
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 520 HYRNVKHL*FSLYIVVRFVTSGFFGQFNRFYFNLHV*G 407
H+ L F LY RF FF ++ +F +H+ G
Sbjct: 1215 HFSKFVFLNFQLYFFCRFSNKSFFNRWGSSFFLMHIIG 1252
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 304 WGWYPFSSAMYVRETTSPSGDLYWLDPETSRAISSLPRDFTFPWAW 167
W W S +E ++P D+ + DP+ S+ I S ++ + W W
Sbjct: 462 WEWEDRSLLTQSKELSAPVLDIAF-DPDDSKTIVSCGKEHIYFWRW 506
>SB_9848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = +3
Query: 78 EEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGE 257
+E+ +SDY E + S Y + +K+L G+ Q E
Sbjct: 159 QESNSKKSDYGDGDEDEMSL-YTGRHSEPASDDKMLKNLLDQGDGTLAFGTPQEAKEEDH 217
Query: 258 VVS-LTYIADENGYQPQGSHLPTTPAPLPVP 347
++ + ++ ++ P+G HLP T PL P
Sbjct: 218 LIKEIEDMSRQSAKLPKGLHLPYTNGPLDTP 248
>SB_29690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 390 RDAQRCKREHGGYARVPAEVRGWSAS 313
RDA+ C+R G + VP WSAS
Sbjct: 65 RDARACERAEGIHTPVPESNSAWSAS 90
>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
Length = 739
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +3
Query: 171 AQGKVKSLGKDEIALEVSGSSQYKSPEGEVVSLTYIADENGYQPQGSHLPTTPAPLPVPE 350
AQ +KSLG + +EVS ++ Y+S + A E + Q P P P P
Sbjct: 515 AQLPIKSLGHPFVEMEVSEATGYESVDRVCSVFAVCAVEMSREQQ--EQPDIVDPSPAPS 572
Query: 351 HILRALAYIAEH 386
++ + EH
Sbjct: 573 EEEDVISKVTEH 584
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 291 GYQPQGSHLPTTPAPLPVPEHILRALAYIAEHPYKEPVKP*TC 419
G PQ S +PTT A + +P H + + A Y P C
Sbjct: 1958 GPVPQDSSVPTTSACMYLPRHSVAPFGHTAPRLYSAHSSPNLC 2000
>SB_19362| Best HMM Match : M (HMM E-Value=0.0014)
Length = 722
Score = 27.9 bits (59), Expect = 5.8
Identities = 25/75 (33%), Positives = 32/75 (42%)
Frame = -3
Query: 411 KALQALCRDAQRCKREHGGYARVPAEVRGWSASVNPGVGIRSRLRCMSERQPHLREICIG 232
K L A + QR KREH R AE R GV + + + L+E G
Sbjct: 402 KELVATRSEMQRLKREHERLQRENAE-REIDRLTTEGV-----TKANNSKINQLKEQVAG 455
Query: 231 WTQKLRELFHPCQEI 187
TQK+ EL C E+
Sbjct: 456 STQKMDELKRKCYEL 470
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -3
Query: 519 ITEMSNICNSVYTLLCAL*RVGFLVSLIVFILIYTFKALQALCRDAQ 379
IT++S N+ YTLLC F + +F+++ +FK LC +A+
Sbjct: 105 ITDVSGCGNNWYTLLCKC----FAIRKDIFVVVQSFKE-WTLCFEAK 146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,301
Number of Sequences: 59808
Number of extensions: 380811
Number of successful extensions: 1185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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