Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L17
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa...    33   0.17 
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    29   2.0  
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain...    28   3.6  
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m...    28   3.6  
At5g62110.1 68418.m07796 hypothetical protein                          27   6.2  
At3g28790.1 68416.m03593 expressed protein                             27   6.2  
At2g38340.1 68415.m04710 AP2 domain-containing transcription fac...    27   6.2  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    27   6.2  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    27   6.2  
At1g17730.1 68414.m02195 SNF7 family protein contains Pfam domai...    27   6.2  
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family...    27   6.2  
At4g25160.1 68417.m03622 protein kinase family protein contains ...    27   8.3  
At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein ...    27   8.3  
At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein ...    27   8.3  

>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q9WTV7 RING finger
           protein 12 (LIM domain interacting RING finger protein)
           {Mus musculus}; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 390

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 45  CIIGYVYATSDEEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKD 203
           CII  +YA +D+E    ++D  Q P+  F+     E  +SG+A+G +   G D
Sbjct: 274 CIIAILYAVADQEG-ASKNDIDQMPKFRFTKTGNVEK-LSGKARGIMTECGTD 324


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 246 PEGEVVSLTYIADENGYQPQGSHL--PTTPAPLP-VPEHILRALAYIAEHPYKEP 401
           P G   SL     + GYQ Q  H   P    P+P +P H L   +++  HP+  P
Sbjct: 555 PPGPHPSLLGSGQQQGYQQQQQHQGHPQQMLPMPNMPHHQLPPSSHMPLHPHHLP 609


>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1362

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 81   EAKVLRSDYSQSPEGDF---SYAYETENGISGQAQGKVKSLGKDEI-ALEVSGSSQYKSP 248
            EAKV R +   SP GDF   +YA   EN +   ++ K      D+  A   S  S   S 
Sbjct: 930  EAKVEREEGELSPTGDFEEDNYAVHGENDMEALSKSKENDATADDASAPRSSDGSGNTSH 989

Query: 249  EGEV 260
             G+V
Sbjct: 990  NGDV 993


>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
           myosin heavy chain (GI:1408194) {Placopecten
           magellanicus}; similar to Myosin heavy chain, clone 203
           (Fragment) (SP:P39922){Hydra attenuata}; contains one
           transmembrane domain
          Length = 323

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 72  SDEEAKVLRSDYSQSPEGDFSYAYETENGISGQAQGKVKSLGKDEIALEVS-GSSQYKSP 248
           SDEE KVL +  S++ E +   A      I+ + +G+  +   +++  E+S      +  
Sbjct: 90  SDEERKVLEAIASRASELETEVARLQHELITARTEGEEATAEAEKLRSEISQKGGGIEEL 149

Query: 249 EGEVVSLTYIADEN 290
           E EV  L  + +EN
Sbjct: 150 EKEVAGLRTVKEEN 163


>At5g62110.1 68418.m07796 hypothetical protein
          Length = 691

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +3

Query: 117 PEGDFSYAYETENGISGQAQGKVKSLGKDEIALEVSGSSQYKSPEGEVVSLTYIADENGY 296
           PE   SY +   NGI+    G +  LG++ +   V+G+       G   S+ +  DEN  
Sbjct: 271 PEFGTSYMHSNYNGINTDQVGNLVGLGRERV--NVNGNVSLGQNLG---SMNWNFDENNM 325

Query: 297 QPQGSHLPTTPAP 335
              GS      +P
Sbjct: 326 SNHGSSTSRFSSP 338


>At3g28790.1 68416.m03593 expressed protein 
          Length = 608

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
 Frame = +3

Query: 66  ATSDEEAKVLRSDYSQSPEGDFSYA--YETENGISGQAQGKVKSLGKDEIALEVSGSSQY 239
           ++ +E +   +S  + S  G  S A   ET  G   +A  K  S  K +     S  + Y
Sbjct: 204 SSDNESSSNTKSQGTSSKSGSESTAGSIETNTGSKTEAGSKSSSSAKTKEVSGGSSGNTY 263

Query: 240 KSPEGEVVSLTYIADENGYQPQGSHLPTTPAPLP 341
           K   G           +G  P GS  PT   P P
Sbjct: 264 KDTTGS---------SSGASPSGSPTPTPSTPTP 288


>At2g38340.1 68415.m04710 AP2 domain-containing transcription
           factor, putative (DRE2B) Similar to DREB2A (GP:3738230)
           and DREB2B (GP:3738232) [Arabidopsis thaliana]; DRE
           binding proteins may be involved in dehydration or low
           temp response
          Length = 244

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 140 IRDREWHQWPGPRKSKISWQG*NSSRS 220
           +R R W +W    +  +S +G NSSRS
Sbjct: 73  VRQRVWGKWVAEIREPVSHRGANSSRS 99


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 291 GYQPQGSHLPTTPAPLPVP 347
           G+ P G+H P  P P PVP
Sbjct: 229 GFPPLGAHGPFQPTPSPVP 247


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 291 GYQPQGSHLPTTPAPLPVP 347
           G+ P G+H P  P P PVP
Sbjct: 229 GFPPLGAHGPFQPTPSPVP 247


>At1g17730.1 68414.m02195 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 203

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = +3

Query: 219 VSGSSQYKSPEGEVVSL-TYIADENGY-------QPQGSHLPTTPAPLPVPEHILRALA 371
           ++GS+   +PEGEV SL   +AD+ G        QP G  +PT        + + R LA
Sbjct: 139 MAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIPTKTEEKVEEDDLTRRLA 197


>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
           protein Common family member: At2g32840 [Arabidopsis
           thaliana]
          Length = 332

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 222 SGSSQYKSPEGEVVSLTYIADENGYQPQGSHLPTTPAPLPVPEH 353
           S +S   SP     S T +   N  +P  S  P  P PLP P +
Sbjct: 8   SSASLTVSPSLSTASETPVTPVNTVRPPPSQPPPAPPPLPPPTY 51


>At4g25160.1 68417.m03622 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 835

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 292 PFSSAMYVRETTSPSGDLYWLDPETSRA--ISSLPRDFTF 179
           P S+   + + TSP G L ++DPE  R   ISS    ++F
Sbjct: 631 PLSTKFTIYKQTSPVGTLCYIDPEYQRTGRISSKSDIYSF 670


>At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein
           (FLA7) identical to gi_13377782_gb_AAK20860
          Length = 254

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 300 PQGSHLPTTPAPLPVPEHI 356
           P    LP TPAP P PE++
Sbjct: 27  PPAPVLPPTPAPAPAPENV 45


>At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein
           (FLA7) identical to gi_13377782_gb_AAK20860
          Length = 254

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 300 PQGSHLPTTPAPLPVPEHI 356
           P    LP TPAP P PE++
Sbjct: 27  PPAPVLPPTPAPAPAPENV 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,166,539
Number of Sequences: 28952
Number of extensions: 264382
Number of successful extensions: 868
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)