BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L15 (524 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 29 0.56 SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 5.2 SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 6.9 SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 9.1 SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 25 9.1 SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 25 9.1 >SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr 3|||Manual Length = 587 Score = 28.7 bits (61), Expect = 0.56 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 211 LSFSQ*NSHGFSYVLPSDPQTGL*IFPQIHNGGGRAVT 98 L++ Q +++G SYVL +DP F + NG R T Sbjct: 289 LAYEQADANGISYVLATDPDADRFAFAEKINGAWRRFT 326 >SPBC947.06c |||spermidine family transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 498 Score = 25.4 bits (53), Expect = 5.2 Identities = 11/35 (31%), Positives = 14/35 (40%) Frame = +1 Query: 244 PHARWASPATVPWNMPPSVALTEKLTPTNVHWNAP 348 P R V W MP + + N+HW AP Sbjct: 364 PEQRLPLMMAVGWLMPAGIFVFAWTNSPNIHWIAP 398 >SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharomyces pombe|chr 2|||Manual Length = 774 Score = 25.0 bits (52), Expect = 6.9 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 7/29 (24%) Frame = +2 Query: 227 DNREKHRMRGGHPLLLY-------LGICP 292 DNR+ +R G P++LY +G+CP Sbjct: 697 DNRQVFMVRNGEPMILYPEESAYEMGLCP 725 >SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination repair protein Sfr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 299 Score = 24.6 bits (51), Expect = 9.1 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Frame = +1 Query: 133 EKSIVPSAGQMVRRTRTRVN--FTAKRTRHTA--I*QS*KTPHARWASPATVPWNMPPSV 300 EK++ P T + F+ KR R + + K+P + ASP N+ PS+ Sbjct: 69 EKALTPDLRDTKIHTSLPITTPFSKKRAREAKNILLKPFKSPLRQTASPQVADTNLKPSL 128 Query: 301 ALT 309 A+T Sbjct: 129 AVT 131 >SPBC2A9.06c |||di-trans, poly-cis-decaprenylcistransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 258 Score = 24.6 bits (51), Expect = 9.1 Identities = 9/22 (40%), Positives = 11/22 (50%) Frame = -2 Query: 415 KLASLAPWHSPSCSIFRDGIIF 350 KL PW C IF D I++ Sbjct: 214 KLQGFPPWQLRLCEIFHDPILY 235 >SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|Schizosaccharomyces pombe|chr 2|||Manual Length = 287 Score = 24.6 bits (51), Expect = 9.1 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = +2 Query: 212 DTQQYDNREKHRMRGGHPLL 271 D Y NR +MRG PLL Sbjct: 94 DNPYYKNRPPQKMRGNKPLL 113 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,360,523 Number of Sequences: 5004 Number of extensions: 52789 Number of successful extensions: 134 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 134 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 214353836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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