Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L15
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54030.1 68418.m06720 DC1 domain-containing protein contains ...    33   0.12 
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc...    31   0.47 
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO...    31   0.63 
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    31   0.63 
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    30   1.1  
At3g17750.1 68416.m02265 protein kinase family protein contains ...    30   1.1  
At5g55960.1 68418.m06979 expressed protein                             29   2.5  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    29   2.5  
At3g32904.1 68416.m04164 hypothetical protein                          29   2.5  
At1g73460.1 68414.m08504 protein kinase family protein contains ...    29   2.5  
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc...    29   2.5  
At5g56050.1 68418.m06993 hypothetical protein                          28   4.4  
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi...    28   4.4  
At5g42620.1 68418.m05188 expressed protein                             27   7.7  

>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 419

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 135 KIYSPVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVGIPCYCTLEYAPVCGSNGK 314
           K+Y+ +  S G+ YEN C F C+   +       + T C + +   C     P+  S  K
Sbjct: 83  KVYTHIFTSSGRIYENTCHF-CQ---SKLEFLFARCTICNLNVDIECLFALPPLTISEPK 138

Query: 315 TYANKCSL 338
            + +  SL
Sbjct: 139 HHKHSLSL 146


>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
           2b protein [Arabidopsis thaliana] GI:509423; contains
           Pfam profiles PF00134: Cyclin, N-terminal domain,
           PF02984: Cyclin, C-terminal domain; identical to cDNA
           cyc2a mRNA for cyclin 2a protein GI:728518
          Length = 429

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  YSVTALPPPLCICGKIYSPVCGSDG-KTYENPCEFYC 200
           Y +   PP L     +Y+  C  DG + + + CEF+C
Sbjct: 336 YEMLRFPPSLLAATSVYTAQCTLDGSRKWNSTCEFHC 372


>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
           cell expansion protein COB, putative similar to
           phytochelatin synthetase GI:29570314; similar to
           GB:AAK56072; identified in Roudier, et al, Plant Phys.
           (2002) 130:538-548 (PMID:12376623); identical to cDNA
           putative phytochelatin synthetase GI:3559804; contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 456

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 241 TPH-ARWASPATVPWN-MPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELNWRV 414
           TPH A   SP T     +PP V  T  + P  VHW+  K+ Y+   W +       N+R+
Sbjct: 270 TPHLASVVSPPTKKGTVLPPLVQCTRHMCPIRVHWHV-KQNYKE-YWRVKITITNFNYRL 327


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 357 IPSLKMEHD---GE-CQGAKLASLHPCICTREKDPVCGSDGVTY 476
           +PS K+  +   GE C+G    +  P  C R  DPVCG D VTY
Sbjct: 47  LPSEKINGEKNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTY 89



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 147 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 260
           PVCG D  TY   C      D     + +VK  AC+VG
Sbjct: 80  PVCGEDSVTYWCGC-----ADALCHGVRVVKQGACDVG 112


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
 Frame = +3

Query: 120 LCICGKIYSPVCGSDGKTYENPCEFYCEKDKT----HSNMTIVKNTACE-----VGIPCY 272
           LC CGK   P   +      + C   CE+  +    H  + +     C      V   C+
Sbjct: 165 LCYCGKEEDPPADNPW-ILPHSCGEVCERPLSNNCGHCCLLLCHPGPCASCPKLVKAKCF 223

Query: 273 CT-LEYAPVCGSNGKTYANKCSLECTQKIIPSLKMEHDGECQGAKLASLHPCICTREKD 446
           C  +E    CG    +  + C       I    ++ HDGEC   +  +++ C C + K+
Sbjct: 224 CGGVEDVRRCGHKQFSCGDVCERVLDCNIHNCREICHDGECPPCRERAVYKCSCGKVKE 282


>At3g17750.1 68416.m02265 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 1138

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 168 YHLTRRRDYRFFRKYITAVAELLPSIL 88
           YHL R  DY +FR+++  V ELL + L
Sbjct: 887 YHLLRLYDYFYFREHLLIVCELLKANL 913


>At5g55960.1 68418.m06979 expressed protein
          Length = 648

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 342 IPVNICWRKFFR-*SHRRGHIPRYSSRGCPPR 250
           IP N+ W++ FR  S R+   P  SS   PPR
Sbjct: 14  IPTNLAWQEMFRSASSRKPQDPPSSSSSSPPR 45


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 444 DPVCGSDGVTY 476
           DPVCG+DGVTY
Sbjct: 52  DPVCGTDGVTY 62



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 147 PVCGSDGKTYENPCEFYCEKDKTHSNMTIVKNTACEVG 260
           PVCG+DG TY   C      D       +VK  AC+ G
Sbjct: 53  PVCGTDGVTYWCGC-----PDAACHGARVVKKGACDTG 85


>At3g32904.1 68416.m04164 hypothetical protein 
          Length = 330

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 253 RWASPATVP-WNMPPSVALTEKLTPTNVHWNAPKRLYRL*RWNMMANARELN 405
           +W +P T P WN P +V     + PT   W  P  +    +W+    A +L+
Sbjct: 276 QWGTPPTAPQWNSPSNVPQWT-IPPTTPQWGTPSSMP---QWSSSPTAPQLS 323


>At1g73460.1 68414.m08504 protein kinase family protein contains
           protein kinase domain Pfam:PF00069
          Length = 1169

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 168 YHLTRRRDYRFFRKYITAVAELLPSIL 88
           YHL R  DY ++R+++  V ELL + L
Sbjct: 918 YHLLRLYDYFYYREHLLIVCELLKANL 944


>At1g73450.1 68414.m08503 protein kinase, putative similar to
           nuclear serine/threonine protein kinase GI:3582644 from
           [Rattus norvegicus]
          Length = 1152

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 168 YHLTRRRDYRFFRKYITAVAELLPSIL 88
           YHL R  DY ++R+++  V ELL + L
Sbjct: 901 YHLLRLYDYFYYREHLLIVCELLKANL 927


>At5g56050.1 68418.m06993 hypothetical protein 
          Length = 283

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 238 KTPHARWASPATVPWNMPP-SVALTEKLTP 324
           +TP ++W SP   PW   P S   T   TP
Sbjct: 21  ETPSSKWYSPIYTPWRTTPRSTQSTPTTTP 50


>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 408

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +3

Query: 171 TYENPCEFYCEKDKTHSNMTIVK---NTACEVGIPCYCTLEYAPVCGSNGKTYANKCSLE 341
           TY +    +C +D       + K   N  C+    CY TL Y    G + +T  + C   
Sbjct: 294 TYSHLIHGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKES 353

Query: 342 CTQKIIPSLKM 374
             +  +PS  +
Sbjct: 354 MEKNWVPSFSI 364


>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 294 VCGSNGKTYANKC--SLECTQKIIPSLKMEHDGECQGA 401
           VC S  ++Y   C  SL+C+ + + S   E D EC G+
Sbjct: 786 VCHSACQSYNMACGASLDCSDQTLFSTAEEGDAECTGS 823


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,865
Number of Sequences: 28952
Number of extensions: 286169
Number of successful extensions: 739
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)