Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L14
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    29   0.33 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   1.3  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   7.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   9.4  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   9.4  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   9.4  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 KPPTLDPNEWWGPNELN 327
           +P  LDPN WW PN L+
Sbjct: 315 EPEGLDPNSWWYPNGLS 331


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -1

Query: 404 NRCFKSLIITSWNLILKGLILISFLVFSSF----GPHHSLGSRVGGF 276
           N CF+SL ++ WN +    ++   L++ +     G  +++ S V GF
Sbjct: 200 NGCFRSLALSGWNPVPAEFVIQGHLLYLTVLTIEGKTYNITSHVSGF 246


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 370 QEVMISDLKQRLKNHRPF 423
           ++V I +LK R K+H PF
Sbjct: 101 EDVSIEELKSRFKDHLPF 118


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 316 NELNTKNDISIRPFKIKFQEVMISDLKQRLKN--HRPFV 426
           +E+N K  +S+   K+ FQE   S LK++  N  H P V
Sbjct: 652 SEVNLKKSLSLASSKLSFQEAGTS-LKEKTANVQHSPEV 689


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 379 MISDLKQRLKNHRPFVPALEGVAFEYGFNTAQLESWLKYWAEEYPLRNGR 528
           + S+L QR+++    +   E    E+G+   Q    L  W E  P R  R
Sbjct: 49  IFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETR 98


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 313 PNELNTKNDISIR---PFKIKFQEVMISDLKQRLK 408
           P  L+TKN I  +    FK  FQEV  SD KQ+ +
Sbjct: 216 PLYLSTKNTILKKYDGRFKDTFQEVYESDYKQKFE 250


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 308 HHSLGSRVGGFDGPQINIYHTLIAM 234
           H  L ++ G  D  Q   YH LIA+
Sbjct: 169 HWELAAKQGSLDAHQFLAYHNLIAL 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,241
Number of Sequences: 5004
Number of extensions: 36491
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)