Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L14
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320           28   5.4  
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024...    27   7.2  

>05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320
          Length = 251

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = -1

Query: 395 FKSLIITSWNLILKGL--ILISFLVFSSFGPHHSLGSRVGGFDGPQINIYHT----LIAM 234
           F+S +  +  L+   L  IL+ +L      P H+LGS +G   G  + I  T     +  
Sbjct: 101 FRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVY 160

Query: 233 ATTLVPNSA 207
           AT L P S+
Sbjct: 161 ATILDPRSS 169


>02_05_0497 -
           29502012-29502101,29502128-29502197,29502302-29502411,
           29502530-29502641,29503341-29503498,29503592-29503807,
           29504127-29504354,29504722-29504801,29504886-29505056,
           29505179-29505281,29505369-29505551,29506313-29506813,
           29506935-29507100,29507517-29507566,29508047-29508127,
           29508291-29508398,29508874-29508939,29509053-29509109,
           29509442-29509507,29509917-29510006,29510850-29510975,
           29511681-29511717,29512192-29512250,29512562-29512615,
           29513294-29513428,29513542-29513612,29513720-29513957
          Length = 1141

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 286 TLDPNEWWGPNELNTKND 339
           T+D +EW+ P +L T+ND
Sbjct: 473 TIDRHEWYAPPQLYTRND 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,593
Number of Sequences: 37544
Number of extensions: 226485
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)