Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L14
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    58   3e-09
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    35   0.032
AF024493-3|AAB70322.2|  319|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z74475-5|CAA98959.2|  279|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = +1

Query: 235 IAISVWYMLICGPSKPPTLDPNEWWGPNELNTKNDISIRPFKIKFQEVMISDLKQRLKNH 414
           +A +VW +L   P K   ++ N ++G  +    N   I+PFK+  ++ +I DLK RL+N 
Sbjct: 16  LAAAVWNLL---PEKEINVEENNYYGSGKAKPDNT-EIKPFKVNVEQSVIDDLKHRLQNA 71

Query: 415 RPFVPALE-GVAFEYGFNTAQLESWLKYWAEEYPLR 519
           R     LE    F YGFN+ QL     YW  +Y  R
Sbjct: 72  RISHSVLEDSDDFYYGFNSKQLLKLRDYWLNKYDWR 107


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +1

Query: 274 SKPPTLDPNEWWGPNELNTKN----DISIRPFKIKFQEVMI-SDLKQRLKNHRPFVPALE 438
           +KPPT  PN W G N+L T N    + SI   K+  +E++  S+ +   K     + +LE
Sbjct: 25  AKPPT-SPNIWLGSNDLKTSNEPVAEASIE-MKVNSEELLTSSENRDGTKRVVKHIRSLE 82

Query: 439 GVAFEYGFNTAQLESW 486
              +E G     LE+W
Sbjct: 83  PSGYEGGNEGNNLEAW 98


>AF024493-3|AAB70322.2|  319|Caenorhabditis elegans Hypothetical
           protein F23F1.3 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -1

Query: 464 LKPYSKATPSRAGTNGR*FFNRCFKSLIITSWNLILKG 351
           L  YSKA PSR    G  FF+ C    I  S  L+L G
Sbjct: 255 LTKYSKAIPSRLTDLGTSFFSHCVTMHIDESSELVLFG 292


>Z74475-5|CAA98959.2|  279|Caenorhabditis elegans Hypothetical
           protein R04F11.1 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -1

Query: 395 FKSLIITSWNLILKGLILISFLVFS 321
           +K L++TS  LI+ GLIL +F +FS
Sbjct: 6   YKFLLVTSIFLIVSGLILTAFSLFS 30


>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
            protein Y92H12A.5 protein.
          Length = 1375

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 465  VEAILKSDAFKGWYEWTVILQSLFQIADHHLLELD 361
            VE ILKS AF+ W ++ +    L  IA+ + LE D
Sbjct: 1040 VENILKSLAFRNWSDFNI--NQLLLIANAYRLEYD 1072


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,741,007
Number of Sequences: 27780
Number of extensions: 197178
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)