Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L14
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57990.1 68416.m06463 expressed protein                             29   1.9  
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi...    29   2.6  
At3g03380.1 68416.m00336 DegP protease, putative contains simila...    28   3.4  

>At3g57990.1 68416.m06463 expressed protein
          Length = 367

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +1

Query: 286 TLDPNEWWGPNELNTKNDIS--IRPFKIKFQEVM--ISDLKQRLKNHRPFVPALEGVAFE 453
           T DP +  GP +  T  D++  I   + + +++   + DL++ + N RP+ PA      +
Sbjct: 246 TGDPGKVSGPAQFTTSGDVAEVIEELRTENKQLKRAVEDLREVISNVRPYSPA----TID 301

Query: 454 YGFNTAQLES 483
           YG ++   ES
Sbjct: 302 YGSHSKYRES 311


>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1064

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 393 QIADHHLLELDFKRSYTYIILS 328
           + A HHLLEL+ + S TY++LS
Sbjct: 881 EFAAHHLLELEPEDSATYVLLS 902


>At3g03380.1 68416.m00336 DegP protease, putative contains
           similarity to degP GI:2623992 from [Bradyrhizobium
           japonicum]
          Length = 1097

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 286 TLDPNEWWGPNELNTKNDIS 345
           T+D +EW+ P +L T+ND S
Sbjct: 471 TIDHHEWYAPPQLYTRNDSS 490


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,158,229
Number of Sequences: 28952
Number of extensions: 186970
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)