BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L13 (577 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718... 31 0.66 08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713... 29 2.7 03_02_0178 + 6195402-6199158,6199438-6200003 29 3.5 04_03_0118 - 11474060-11475298 28 4.6 10_08_0898 + 21424379-21424792,21424974-21425723 28 6.1 01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 28 6.1 05_05_0287 + 23868503-23869045 27 8.1 04_04_0500 - 25677767-25680850 27 8.1 03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269 27 8.1 >02_05_0831 - 32071280-32071403,32071528-32071706,32071786-32071893, 32071987-32072109,32072480-32072608,32072998-32073281, 32073783-32074094,32074208-32074340 Length = 463 Score = 31.1 bits (67), Expect = 0.66 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = +2 Query: 89 ALTPPGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPED--KM 262 ALT GA S +PG AA + P + + VKA + D G++ ED ++ Sbjct: 35 ALTLQGADLSGIIKRVPGEAAAAEVSP----VMRVLDEVKASSASDSDSGGRSEEDAERL 90 Query: 263 AGILLEARQ 289 A +L E R+ Sbjct: 91 ASLLDELRE 99 >08_02_1328 + 26170248-26170493,26170702-26170798,26171325-26171342, 26171566-26171666,26173486-26173562,26173736-26173802, 26176467-26176577,26176652-26176749,26176834-26176903 Length = 294 Score = 29.1 bits (62), Expect = 2.7 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +1 Query: 97 PTGSTA*RVLRHDPRARC*CSDSTSALHHHYS-CQLGKSWSFH*RGYQRQNTRRQNG 264 PT + A R RC C +TS+ H +S CQ W H R + Q +Q G Sbjct: 11 PTAAAAAASTSSSSRCRCRCRITTSSSAHGWSNCQ---GWRLHHRVWAAQAADQQGG 64 >03_02_0178 + 6195402-6199158,6199438-6200003 Length = 1440 Score = 28.7 bits (61), Expect = 3.5 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Frame = -3 Query: 410 VCLILWHASCGSRRYLVHHS*GVARRYHRG-LRSKCRRSCHPDELPG 273 VCL H CG R L+ +R Y L+ C HP E+ G Sbjct: 1137 VCLHWCHTDCGLRHSLIRKGGSGSRAYSTNELQFHCAACGHPSEMFG 1183 >04_03_0118 - 11474060-11475298 Length = 412 Score = 28.3 bits (60), Expect = 4.6 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 338 RRYHRGLRSKCRRSCHPDE 282 R+YH R C SC+PDE Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322 >10_08_0898 + 21424379-21424792,21424974-21425723 Length = 387 Score = 27.9 bits (59), Expect = 6.1 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = -2 Query: 150 AACPGIMSKHALGGAPGGVSAGKRHHRCNCYYVSEH 43 AA P +M H GG GG SA HH + YY H Sbjct: 28 AAAP-MMGHHGGGGGGGGYSAAHHHH--HHYYGMPH 60 >01_07_0232 + 42182942-42183490,42183593-42183661,42184320-42184451, 42184547-42184600,42184714-42184758,42185383-42185522, 42185777-42185902,42185985-42186002,42186631-42187276, 42188121-42188843 Length = 833 Score = 27.9 bits (59), Expect = 6.1 Identities = 15/33 (45%), Positives = 21/33 (63%) Frame = -2 Query: 333 VSSGLTVQVPTILSP*RASRRMPAILSSGVLPL 235 VSS + +P + SP +ASRR+ A+ S LPL Sbjct: 19 VSSQPPLHLPRLRSPHQASRRLSALPFSRALPL 51 >05_05_0287 + 23868503-23869045 Length = 180 Score = 27.5 bits (58), Expect = 8.1 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = -1 Query: 250 GCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPWDHVEARARRCSR 101 G +D G+ S Y A + G V WD V RARRC + Sbjct: 32 GGLVSDLDAAGVASSYYAPFAAAGAGAAIAAVAGVVAWDAVGHRARRCGK 81 >04_04_0500 - 25677767-25680850 Length = 1027 Score = 27.5 bits (58), Expect = 8.1 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 153 SAACPGIMSKHALGGAPGGVSAGKRHHRC 67 S A ++S HA G+PG V R+ RC Sbjct: 122 SGAASSLLSCHARSGSPGDVLGAFRYIRC 150 >03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269 Length = 309 Score = 27.5 bits (58), Expect = 8.1 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = -1 Query: 376 HGVIWFTTVEGLREGIIGAYGPSADDL-VTLTSFQE--DAGHFVFG 248 H +W +E + E +G G ADD+ L S E D+G+ FG Sbjct: 142 HAALWVKEIEKMEEARLGGGGGGADDIDRLLDSCSEIFDSGNTDFG 187 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,165,872 Number of Sequences: 37544 Number of extensions: 447051 Number of successful extensions: 1495 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1494 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1340735508 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -