Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L13
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718...    31   0.66 
08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713...    29   2.7  
03_02_0178 + 6195402-6199158,6199438-6200003                           29   3.5  
04_03_0118 - 11474060-11475298                                         28   4.6  
10_08_0898 + 21424379-21424792,21424974-21425723                       28   6.1  
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    28   6.1  
05_05_0287 + 23868503-23869045                                         27   8.1  
04_04_0500 - 25677767-25680850                                         27   8.1  
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269     27   8.1  

>02_05_0831 -
           32071280-32071403,32071528-32071706,32071786-32071893,
           32071987-32072109,32072480-32072608,32072998-32073281,
           32073783-32074094,32074208-32074340
          Length = 463

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 89  ALTPPGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPED--KM 262
           ALT  GA  S     +PG AA  +  P    +   +  VKA  + D    G++ ED  ++
Sbjct: 35  ALTLQGADLSGIIKRVPGEAAAAEVSP----VMRVLDEVKASSASDSDSGGRSEEDAERL 90

Query: 263 AGILLEARQ 289
           A +L E R+
Sbjct: 91  ASLLDELRE 99


>08_02_1328 +
           26170248-26170493,26170702-26170798,26171325-26171342,
           26171566-26171666,26173486-26173562,26173736-26173802,
           26176467-26176577,26176652-26176749,26176834-26176903
          Length = 294

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 97  PTGSTA*RVLRHDPRARC*CSDSTSALHHHYS-CQLGKSWSFH*RGYQRQNTRRQNG 264
           PT + A        R RC C  +TS+  H +S CQ    W  H R +  Q   +Q G
Sbjct: 11  PTAAAAAASTSSSSRCRCRCRITTSSSAHGWSNCQ---GWRLHHRVWAAQAADQQGG 64


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 410  VCLILWHASCGSRRYLVHHS*GVARRYHRG-LRSKCRRSCHPDELPG 273
            VCL   H  CG R  L+      +R Y    L+  C    HP E+ G
Sbjct: 1137 VCLHWCHTDCGLRHSLIRKGGSGSRAYSTNELQFHCAACGHPSEMFG 1183


>04_03_0118 - 11474060-11475298
          Length = 412

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 338 RRYHRGLRSKCRRSCHPDE 282
           R+YH   R  C  SC+PDE
Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322


>10_08_0898 + 21424379-21424792,21424974-21425723
          Length = 387

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 150 AACPGIMSKHALGGAPGGVSAGKRHHRCNCYYVSEH 43
           AA P +M  H  GG  GG SA   HH  + YY   H
Sbjct: 28  AAAP-MMGHHGGGGGGGGYSAAHHHH--HHYYGMPH 60


>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 333 VSSGLTVQVPTILSP*RASRRMPAILSSGVLPL 235
           VSS   + +P + SP +ASRR+ A+  S  LPL
Sbjct: 19  VSSQPPLHLPRLRSPHQASRRLSALPFSRALPL 51


>05_05_0287 + 23868503-23869045
          Length = 180

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = -1

Query: 250 GCFAADNHVNGMTSFYRADSCSDGVRRWYCLNISSVPWDHVEARARRCSR 101
           G   +D    G+ S Y A   + G           V WD V  RARRC +
Sbjct: 32  GGLVSDLDAAGVASSYYAPFAAAGAGAAIAAVAGVVAWDAVGHRARRCGK 81


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 153 SAACPGIMSKHALGGAPGGVSAGKRHHRC 67
           S A   ++S HA  G+PG V    R+ RC
Sbjct: 122 SGAASSLLSCHARSGSPGDVLGAFRYIRC 150


>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
          Length = 309

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 376 HGVIWFTTVEGLREGIIGAYGPSADDL-VTLTSFQE--DAGHFVFG 248
           H  +W   +E + E  +G  G  ADD+   L S  E  D+G+  FG
Sbjct: 142 HAALWVKEIEKMEEARLGGGGGGADDIDRLLDSCSEIFDSGNTDFG 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,165,872
Number of Sequences: 37544
Number of extensions: 447051
Number of successful extensions: 1495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)