Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L13
         (577 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens ...    66   1e-10
Z85987-1|CAI42222.1|  961|Homo sapiens FYVE, RhoGEF and PH domai...    30   5.1  
BC044311-1|AAH44311.2|  399|Homo sapiens hypothetical protein LO...    30   5.1  
BC034530-1|AAH34530.1|  961|Homo sapiens FYVE, RhoGEF and PH dom...    30   5.1  
AK128824-1|BAC87625.1|  706|Homo sapiens protein ( Homo sapiens ...    30   5.1  

>AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16275 fis, clone NT2RI2027157, moderately
           similar to Mouse SDR2 mRNA. ).
          Length = 626

 Score = 65.7 bits (153), Expect = 1e-10
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
 Frame = +2

Query: 98  PPGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPEDKMAGILL 277
           P G    +C  MIP H    Q+VP  + I  +  + + G  I+V +SG        G LL
Sbjct: 24  PNGKVTQSCHGMIPEHGHSPQSVPV-HDIYVSQMTFRPGDQIEVTLSGHP----FKGFLL 78

Query: 278 EARQGDKI----VGTWTVSPDDTFSQPLNCGE-PNNAVTHKMHAKELDRQTVSYPWTAPK 442
           EAR  + +    +G++T+  D   SQ L C +   +AV+H+  +K+ +   +   W AP 
Sbjct: 79  EARNAEDLNGPPIGSFTLI-DSEVSQLLTCEDIQGSAVSHRSASKKTE---IKVYWNAPS 134

Query: 443 DLEGDVVFKVTIVKSYAVFWVGI 511
                  F VT+V+ Y ++WV I
Sbjct: 135 SAPNHTQFLVTVVEKYKIYWVKI 157


>Z85987-1|CAI42222.1|  961|Homo sapiens FYVE, RhoGEF and PH domain
           containing 1 (faciogenital dysplasia) protein.
          Length = 961

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 86  PALTPPGAPPSACFDMIPG 142
           PA  PPGA P AC D  PG
Sbjct: 18  PATNPPGAAPPACADSDPG 36


>BC044311-1|AAH44311.2|  399|Homo sapiens hypothetical protein
           LOC339344 protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 86  PALTPPGAPPSACFDMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTPE 253
           P L PP  PP     ++P  A  V+  P P ++  AV       +  V+I+ ++ E
Sbjct: 308 PPLPPPPPPPPPPRPVLPPPAPKVEITPEPVSVVAAVVDGAVVAARGVIIAPRSEE 363


>BC034530-1|AAH34530.1|  961|Homo sapiens FYVE, RhoGEF and PH domain
           containing 1 (faciogenital dysplasia) protein.
          Length = 961

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 86  PALTPPGAPPSACFDMIPG 142
           PA  PPGA P AC D  PG
Sbjct: 18  PATNPPGAAPPACADSDPG 36


>AK128824-1|BAC87625.1|  706|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46160 fis, clone TESTI4002141. ).
          Length = 706

 Score = 30.3 bits (65), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 320 LRSKCRRSCHPDELPGGCRPFCLRVFC 240
           LR+     C P +  GGC   C+RV C
Sbjct: 241 LRASVSECCVPGDAQGGCAGICVRVLC 267


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,579,607
Number of Sequences: 237096
Number of extensions: 2379876
Number of successful extensions: 8180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8170
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)