Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L13
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   1.7  
At5g10080.1 68418.m01168 aspartyl protease family protein contai...    29   2.9  
At5g50200.3 68418.m06216 expressed protein similar to unknown pr...    28   3.9  
At5g50200.2 68418.m06218 expressed protein similar to unknown pr...    28   3.9  
At5g50200.1 68418.m06217 expressed protein similar to unknown pr...    28   3.9  
At1g21610.2 68414.m02703 wound-responsive family protein similar...    28   3.9  
At1g21610.1 68414.m02702 wound-responsive family protein similar...    28   3.9  
At3g20300.1 68416.m02572 expressed protein                             28   5.1  
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil...    27   6.8  
At4g04920.1 68417.m00715 expressed protein                             27   6.8  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    27   9.0  

>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 314 SKCRRSCHPDELPGG-CRPFCLRVFC 240
           + C   CH +  PGG CR F  R FC
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRRCFC 73


>At5g10080.1 68418.m01168 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 528

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 104 GAPPSACF-DMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTP 250
           G  PS C  D I    A   +  +P  + T     + GH++   I+GKTP
Sbjct: 447 GWSPSKCQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHAVSPAIAGKTP 496


>At5g50200.3 68418.m06216 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 380 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 520
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


>At5g50200.2 68418.m06218 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 380 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 520
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


>At5g50200.1 68418.m06217 expressed protein similar to unknown
           protein (pir||T05562) isoform contains a non-consensus
           AT acceptor splice site at intron 1
          Length = 210

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 380 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 520
           HK+ AK  D+   S  WT  +D+     F    V++YAV  +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152


>At1g21610.2 68414.m02703 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 683

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 98  PPGAPPSACFDMIPGHAADVQTVPAPYT 181
           PP A P+  F + PGH  +++T   P++
Sbjct: 67  PPNANPNLEFRIAPGHPVEIETNEQPHS 94


>At1g21610.1 68414.m02702 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 684

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 98  PPGAPPSACFDMIPGHAADVQTVPAPYT 181
           PP A P+  F + PGH  +++T   P++
Sbjct: 67  PPNANPNLEFRIAPGHPVEIETNEQPHS 94


>At3g20300.1 68416.m02572 expressed protein
          Length = 452

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 75  GGAYQRLPHREHRLARAST*SQGTLLMFRQYQR 173
           GG  +RL +RE++  R+ + +Q  L  FR+Y R
Sbjct: 19  GGTRERLINRENKFTRSVSHAQDELHSFRKYLR 51


>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
           to SP|Q12627 from Kluyveromyces lactis and SP|P32891
           from Saccharomyces cerevisiae; contains Pfam FAD linked
           oxidases, C-terminal domain PF02913, Pfam FAD binding
           domain PF01565
          Length = 567

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 351 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 235
           LR C ++ S+  +    T+LSP +  RR+P   SS + PL
Sbjct: 17  LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
 Frame = +2

Query: 200 SVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVT 379
           ++++   I VV+  K  E  + G   +       +    VSP   F   L   +PN+ + 
Sbjct: 43  TIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFCVKLK--QPNSNLL 100

Query: 380 HKMHAKELDRQTVSYPWTAPKD---LEGDVVFKVTIVKSYAVFWVGI 511
           HKM   EL R   +  W    +      +   ++   K+   FW+ I
Sbjct: 101 HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPI 147


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 98   PPGAPPSACFDMIPGHAADVQTVPA 172
            PP  PPS   +  P  A+++Q VPA
Sbjct: 1343 PPERPPSGTMNYQPSAASNLQAVPA 1367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,215
Number of Sequences: 28952
Number of extensions: 320550
Number of successful extensions: 890
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)