SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L12
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    31   0.13 
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    30   0.31 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.72 
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    28   0.95 
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    27   1.7  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   1.7  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   2.2  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    27   2.9  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   3.8  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   6.7  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   6.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.8  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   8.8  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   8.8  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   8.8  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 61  VVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYI 195
           ++DYA K     +   V  +  DDDL++IS  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 508 FTKYARHWTGLCKCSCAFENIFMAELKSDTVLGLHSW 618
           F  + R W      +  F +IFM + + D V G++SW
Sbjct: 397 FLLFVRGWLSPLGINRIFGSIFMGKTRQDRVYGMYSW 433


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = +1

Query: 109 VQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSG 288
           ++  T   DLL++ +++ + D N A + +    +   S +   D A       PEN+   
Sbjct: 549 LEQETIPSDLLKVRKDLLD-DSNAAKDTMDKVKKHLKSLLRVGDTARKEF-TWPENMPKP 606

Query: 289 PTIRPFVALFDNYHKNVIRPEFVTPNEETEQ 381
             +   V     YH+ V+R  F+    E EQ
Sbjct: 607 CEVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 187 NYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPT 294
           NY++  +Q K +  SK DE S +LLN    +   PT
Sbjct: 139 NYVRFFIQPKLNNTSKLDEISDSLLNAFSKLKEEPT 174


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 31  LQQIGTVVGGVVDYAKKKSYDDML--RQVQDSTTDDDLLRISEEMFNADINNAFNYIQ 198
           L+++G+   GVV  A++    D++  +Q+   T  DD+  I +E+F     N+ N IQ
Sbjct: 12  LRKLGSGSFGVVWKARENVSGDIIAIKQIDLETGIDDITDIEQEVFMLSNCNSSNVIQ 69


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 432 HKGTNRSGGEYSVDVRCL 379
           H GT+ SGG Y+VDV+ L
Sbjct: 444 HHGTSASGGHYTVDVQQL 461


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -3

Query: 606 TKHSIR-LKFGHKYIFEGATTFAKASPVTSVFCEP---NFLQQLDLFIVLIHLSQPFTN 442
           T H+++ L FG    F GAT   +  PV+    +P   + +   D+ ++LI    P  N
Sbjct: 176 TPHNVKILAFGFVNSFSGATDTVRVLPVSQFSLQPWWNDMVSNKDIDLILIPAHVPVHN 234


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 94  DMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQG 213
           D+ RQV       DL+R+ +  F  D  N F++ + S  G
Sbjct: 349 DLGRQVNSEAHMVDLVRLKQGSFALDDENCFDFSEFSAPG 388


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +1

Query: 214 KTSPMSKNDEASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYI 393
           K   +  ND    + LN+P+ VW+      F++  ++Y K        T N E  +T   
Sbjct: 73  KLKDVKLNDINKKSPLNIPDEVWT-----KFISEVNSYDKEK-ENHLSTGNHELRRT--- 123

Query: 394 NTILATGP-IRTLMNFLVSKGLTQMNEYN 477
            T L  GP + T +  L SK  T  N Y+
Sbjct: 124 -TPLKIGPLLLTRIGLLKSKN-TASNNYS 150


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +1

Query: 151 EEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTI-RPFVALFDNY 327
           E+ F  D +   N I    Q +  P +       + L  P +  +       F   F+N 
Sbjct: 178 EDDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNNE 237

Query: 328 HKNVIRPEFVTPNEETEQTTYINTILATGP 417
            +++ R +  +PN   ++  YI++ ++  P
Sbjct: 238 TESIFRKKIRSPNTINQKHPYISSTISYQP 267


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 514 KYARHWTGLCKCSCAFENIFMAELKSDTVLGLHSW 618
           KY ++W   CK +  F    M +LKS   L +  W
Sbjct: 466 KYRKYWPDFCKAAGVF---CMGDLKSSDSLKVCDW 497


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 76  KKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNA 183
           KK+S +D L Q+     DD++LR+ E+M  A + +A
Sbjct: 173 KKRSNEDNLEQM----ADDEVLRLREQMRLAALRDA 204


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
 Frame = +1

Query: 4    QQGNTAQNTLQQIGTVVG---GVVDYAKKKSYDDMLRQV---QDSTTDDDLLRISEEMFN 165
            Q+G +    L+  GT +G   G  D     + DD L ++   +D+    DL         
Sbjct: 3899 QEGKSNSGELES-GTGLGSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELE 3957

Query: 166  ADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENV 279
            +D+N       VS    +    +N +    + ++PE++
Sbjct: 3958 SDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDL 3995


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 166 ADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSG 288
           +DI  A NY   S+  +T     ++    +  +V +NVW G
Sbjct: 307 SDIRGANNYGWTSILVRTGIFQGDNSPKYSAKHVSDNVWEG 347


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 193 IQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFVALFD 321
           + +S    TSP+S +  AS   LN+P  +    +  PF    D
Sbjct: 241 LDLSNSNPTSPVSPSSMASRRGLNIPPTLKQAVSETPFSTFSD 283


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = +1

Query: 313 LFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRTLMNFLVSKGLTQMNEYNEQV 486
           + DN   +     F  P    E   Y + +     +RTL N +    +T+++E   +V
Sbjct: 197 MLDNISNHRFGAPFSHPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYREV 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,932
Number of Sequences: 5004
Number of extensions: 49960
Number of successful extensions: 160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

- SilkBase 1999-2023 -