Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_L12
(620 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote... 31 0.47
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p... 31 0.81
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 31 0.81
At4g28480.1 68417.m04074 DNAJ heat shock family protein contains... 30 1.1
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 29 1.9
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative... 29 2.5
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote... 29 3.3
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea... 28 5.7
At5g07260.1 68418.m00828 homeobox protein-related contains weak ... 28 5.7
At4g14160.2 68417.m02186 transport protein, putative similar to ... 28 5.7
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-... 28 5.7
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 7.6
At1g71240.1 68414.m08222 expressed protein contains Pfam profile... 27 7.6
>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1041
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 175 NNAFNYIQVSLQGKTSPMSKNDEASSNLLN--VPENVWSGPTIRPFVALFDN 324
NN F Q+ T+P+ + S+N + +PEN+W P ++ F A F N
Sbjct: 450 NNRFTD-QIPADFATAPVLQYLNLSTNFFHRKLPENIWKAPNLQIFSASFSN 500
>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 909
Score = 30.7 bits (66), Expect = 0.81
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 115 DSTTDDDLLRISEEMFNADINNAFNYIQ 198
D +T D L +S EMF D NN +Y+Q
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQ 660
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 30.7 bits (66), Expect = 0.81
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 115 DSTTDDDLLRISEEMFNADINNAFNYIQ 198
D +T D L +S EMF D NN +Y+Q
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQ 660
>At4g28480.1 68417.m04074 DNAJ heat shock family protein contains
Pfam profile PF00226: DnaJ domain; ; similar to DnaJ
homolog subfamily B member 1 (Heat shock 40 kDa protein
1) (Heat shock protein 40) (HSP40) (DnaJ protein homolog
1) (HDJ-1) (Swiss-Prot:P25685) [Homo sapiens] and
(Swiss-Prot:Q9QYJ3) [Mus musculus]
Length = 348
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 136 LLRISEEMFNADINNAFNYIQVSLQGKTSPMSKND-EASSNLLNVPENVWSGPTIRPFVA 312
+L++ + D+ A+ + + +P +K D EA ++ +V S P R A
Sbjct: 8 VLQVDRSANDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR---A 64
Query: 313 LFDNYHKNVIRPEFVTPNEETEQTTYINT 399
++D Y + ++ PN T +Y +T
Sbjct: 65 VYDQYGEEGLKGNVPPPNAATSGASYFST 93
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 29.5 bits (63), Expect = 1.9
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = +1
Query: 46 TVVGGVVDYAKKKSYDDMLRQV-QDSTTDDDLL--RISEEMFNADINNAF---NYIQVSL 207
++V + +Y K YD L V +DS LL R + DI+ A N I+ +
Sbjct: 268 SLVAAMANYLKFDVYDLQLASVMRDSDLRRLLLATRNRSILVIEDIDCAVDLPNRIEQPV 327
Query: 208 QGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTP 363
+GK S+ S LLN + +WS + +F HK+ + P + P
Sbjct: 328 EGKNRGESQGPLTLSGLLNFIDGLWSSCGDERII-IFTTNHKDRLDPALLRP 378
>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 345
Score = 29.1 bits (62), Expect = 2.5
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Frame = +1
Query: 1 GQQGNTAQNTLQQIGTVVGGVVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINN 180
G G+T + L + +Y ++ L++ + D + +M +A + N
Sbjct: 185 GSAGSTEKVDLLKTKFGFDDAFNYKEEPDLSAALKRCFPTGIDIYFENVGGKMLDAVLLN 244
Query: 181 AFNYIQVSLQGKTSPMS-KNDEASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFV 357
+ ++++ G S + +N E NL N+ ++ I+ F A+FD Y K +FV
Sbjct: 245 MNPHGRIAVCGMISQYNLENQEGVHNLSNI---IYKRIRIQGF-AVFDFYEKYSKFLDFV 300
Query: 358 TPNEETEQTTYINTI 402
P+ + + TY+ +
Sbjct: 301 LPHIKEGKITYVEDV 315
>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
kinase, putative contains protein kinase domains
Length = 890
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 94 DMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQG 213
++L Q +D+ DD ++ + NAD+ N+FN + + +G
Sbjct: 34 EILLQFKDNINDDPYNSLASWVSNADLCNSFNGVSCNQEG 73
>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
damage-specific DNA binding protein 2 (GI:10798819)
[Homo sapiens]
Length = 557
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 277 VWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETE--QTTYINTILATGPIRTLMNFLVSK 450
+W ++P +L D HK V+ + +P+ T+ T N I I ++ L S+
Sbjct: 339 IWDMRKLQPKASLHDLAHKRVVNSAYFSPSSGTKILTTCQDNRIRIWDSIFGNLD-LPSR 397
Query: 451 GLTQMNEYNEQVQLLQKIWFTK 516
+ N++N + + W K
Sbjct: 398 EIVHSNDFNRHLTPFKAEWDPK 419
>At5g07260.1 68418.m00828 homeobox protein-related contains weak
similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
[Arabidopsis thaliana]
Length = 541
Score = 27.9 bits (59), Expect = 5.7
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Frame = +1
Query: 193 IQVSLQGKTSPM--SKNDEASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPN 366
I V+ + SP+ ++N + ++ ++ W+ I + F +Y ++ +RPE++
Sbjct: 191 INVNFMPQISPLIQTRNVKLLRRSRHIEDDTWAIAEISMY---FSSYAQH-LRPEYMR-- 244
Query: 367 EETEQTTYINTILATGPIR-TLMNFLVSKGLTQMNEYNEQVQLLQKIWFTKYARHWTGLC 543
+ Y+ +A G + T+++ V K MN +N + + W T +H+ C
Sbjct: 245 ---FPSGYLIQHIANGISKVTILDHWVYKEEEGMNTFNSNSEFGAQRWLTALQKHYYNTC 301
Query: 544 KCS 552
S
Sbjct: 302 PVS 304
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 292 TIRPFVALFDNYHKNVIRPEFVTP-NEETEQTTYINTIL 405
T++P++ LF + N+ R +FV N ++T Y +L
Sbjct: 579 TLKPYLTLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLL 617
>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
/ HD-ZIP transcription factor 13 identical to homeobox
gene 13 protein (GP:12325190) [Arabidopsis thaliana]
Length = 294
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 79 KKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQ---VSLQGKT--SPMSKNDE 243
+K YD + RQ ++DLL+ + A+I N Q ++L +T S +++D
Sbjct: 143 EKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNREQTESINLNKETEGSCSNRSDN 202
Query: 244 ASSNL 258
+S NL
Sbjct: 203 SSDNL 207
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 43 GTVVGGVVDYAKKKSYDDMLRQVQDSTTDDDLLRISEE 156
G+ VG +D ++ YDD+L +++ + LLR E+
Sbjct: 674 GSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEK 711
>At1g71240.1 68414.m08222 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 824
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 41 SVRLSVASLIMLKRKATMTCYVKYRILRRT 130
S L+VA L +++R AT TC KY+++ +T
Sbjct: 562 SKHLAVADLTLVER-ATETCRQKYKVVEKT 590
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,164
Number of Sequences: 28952
Number of extensions: 248392
Number of successful extensions: 737
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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