Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L11
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0289 - 22053561-22055666,22055745-22055771                       29   2.4  
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202...    28   4.2  
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437...    28   4.2  
10_08_0393 + 17517511-17517777,17518913-17518987,17519080-175191...    27   7.3  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    27   7.3  
09_06_0264 - 21929086-21931368                                         27   9.7  
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195...    27   9.7  

>09_06_0289 - 22053561-22055666,22055745-22055771
          Length = 710

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 246 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 338
           VRW  EW  + LV+ + GL+W  ++A   ++
Sbjct: 40  VRWWDEWQLRILVLGSLGLQWFLLVAAPMRK 70


>11_04_0094 +
           13418604-13418680,13419331-13419400,13420078-13420236,
           13420334-13420445,13420530-13420649,13422249-13422406,
           13422987-13423217,13424621-13424713,13425088-13425227,
           13426331-13426401,13427554-13427637,13427752-13427846
          Length = 469

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 298 ASNGVRSWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIY 435
           +S+   SW L +    K KNW NG   ++ +G    FG  S P DI+
Sbjct: 35  SSSQFYSWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIH 80


>04_01_0332 +
           4378111-4378329,4378862-4378997,4379113-4379165,
           4379286-4379394,4379467-4379603,4379698-4379894,
           4379979-4380128,4380233-4380293,4380380-4380500,
           4380901-4380991,4381116-4381209,4381446-4381541,
           4382176-4382316,4382592-4382642,4383093-4383161,
           4384072-4384142,4384244-4384336,4384820-4384910,
           4386164-4386235,4387226-4387351,4387537-4387593,
           4387926-4388000,4388570-4388658,4388814-4388891,
           4389308-4389446,4389868-4389977,4390151-4390250,
           4390548-4390655
          Length = 977

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +1

Query: 298 ASNGVRSWLLDSNGYT-KTKNWNGYPPSVP----LGNINLFGMHSKPSDIYNGT 444
           ++NG R+WL+D N  T K  +W+      P      +I+++ +H +    ++ T
Sbjct: 286 SANGTRTWLVDINSETLKPASWDELSDEKPNLESFSDISIYELHIRDFSAHDST 339


>10_08_0393 +
           17517511-17517777,17518913-17518987,17519080-17519133,
           17519235-17519300,17519383-17519441,17520143-17520177,
           17520527-17520616,17520684-17520730,17520817-17520917,
           17521259-17521323,17521819-17522135,17522418-17522481,
           17522565-17522740,17523386-17523487,17523704-17523847,
           17523937-17524032,17524357-17524458,17524740-17524835
          Length = 651

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 287 DNKPFGYPFDRPADSTCLVPKS 222
           DN PF Y +  P DS C +P +
Sbjct: 429 DNGPFCYGYTLPKDSNCTMPST 450


>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 124 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEH 216
           N++G  + RG+V  +  V++ V YE +  EH
Sbjct: 212 NVVGALRARGHVTILAAVVSNVTYECLSPEH 242


>09_06_0264 - 21929086-21931368
          Length = 760

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 231 NQARRVRWTVEWIAKRLVINNKGLKWCQIMATRFKR 338
           N +  V+W  EW  + LV+ + G++W  ++A   ++
Sbjct: 3   NVSAAVQWWDEWQLRILVLCSLGIQWFLLLAAPMRK 38


>08_02_1550 -
           27818271-27818618,27818743-27818955,27819079-27819597,
           27820239-27820357,27820457-27820763,27820840-27820922,
           27821027-27821204,27821328-27821401,27822078-27822293,
           27822724-27822757
          Length = 696

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 292 TKASNGVRSWLLDSNGYTKTKN-WNGYPPSVPLGNINLFGMHSKPSDIYN 438
           T  S+  + +     GY    N W+GYPP V     ++ G+ + P+ +YN
Sbjct: 155 TMYSSQAQPFYYQGPGYDNPSNEWDGYPPYV-----SVEGLEAGPAVVYN 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,442,647
Number of Sequences: 37544
Number of extensions: 274391
Number of successful extensions: 703
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)