Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L11
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             31   0.46 
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)                   27   7.5  
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                       27   9.9  
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)                27   9.9  

>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 322 LLDSNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFPSS--NNFMRSVNGKE 489
           ++DS G     N+ G+   VP G++ L+G H+     +   FP S  N+F+  V G+E
Sbjct: 439 IVDSFGTEAQFNYAGFTEKVPGGSMALWGRHNLNLKQFMTMFPHSPDNSFLGFVVGEE 496


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 109 LLLFRNIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRLFGTKH-VESAG 255
           LLLF   + FR V GN+ F +       Y D++    R+ G K+ +E  G
Sbjct: 388 LLLFMRNLTFRGVTGNIRFEKSGNPTNAYYDVMNFRKRVPGGKYFIEKVG 437


>SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 246 VRWTVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTF 377
           ++W   +I  R ++ N  +KW +     ++ I  N  +EW+  F
Sbjct: 49  IKWLRCFIVWRGIVTNSAIKWLRCFIV-WRGIVTNSAIEWLRCF 91


>SB_44409| Best HMM Match : PDZ (HMM E-Value=7.1e-33)
          Length = 718

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 215 ILGSLEPSTSSPLDGRMDSQKACYQ*QRPQMVSDH 319
           ++ +  PST SPL  +   + AC +   P++ S H
Sbjct: 289 VVSTARPSTFSPLPAQESPEMACIEALSPKLTSAH 323


>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 169 RKVLAFVVYEDILKEHIRLFGTKHVES--AGRSNG*PKGLLSITKASNGVRSWLLDSNGY 342
           R+ L F     +LKE     G K   S    R      G+LS+T+A    ++W    +G 
Sbjct: 596 REELGFKETGRVLKEERDATGNKDENSLKVARKPQDIGGVLSVTRARKAGKAWKKKIDGQ 655

Query: 343 TKTKNWNGYPPSVP 384
             T + N   PS+P
Sbjct: 656 VST-DQNALVPSLP 668


>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
          Length = 579

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 227 KSLICSLRMSSYTTKASTFLTNSTFPLTFLKPM 129
           K LIC+L  S++  + S      T PL++L PM
Sbjct: 98  KVLICTLLFSAFRLERSPSTPPITAPLSYLPPM 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,431
Number of Sequences: 59808
Number of extensions: 319836
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)