Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L11
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-21|AAK26150.1|  530|Caenorhabditis elegans Hypothetical...    29   2.2  
Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF040661-3|AAG24226.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.0  
U53146-1|AAA96111.1|  348|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024696-1|AAK84516.1|  348|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC090999-21|AAK26150.1|  530|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.2 protein.
          Length = 530

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 391 NINLFGMHSKPSDIYNGTFPSSNNFMRSVNGKESSFAKRKFV*VAYNLVLP 543
           N+ LFG++ + +D  NG+     N +     K++   +R+F+ V  NLV P
Sbjct: 349 NVVLFGVNGRQNDNVNGSQQIQTNQI-----KQAELRQRRFINVVNNLVTP 394


>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 255 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 374
           T++   K LVI  KG  W +  AT+ ++     +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 255 TVEWIAKRLVINNKGLKWCQIMATRFKRIYENKELEWIST 374
           T++   K LVI  KG  W +  AT+ ++     +L W++T
Sbjct: 267 TLKSAKKPLVIVGKGAAWSERGATQVQQFLTKSKLPWLAT 306


>Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical
           protein T01H10.7 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 341 IRKQRTGMDIHLQYLLATSIYLACIQNLQTYTTELFLRLI 460
           +RK ++ M+  L+Y+L   +   C+  L+ + T +F+ +I
Sbjct: 353 LRKNKSKMNQKLEYVLGEPLETICMVILEIFNTAIFMVMI 392


>AF040661-3|AAG24226.1|  187|Caenorhabditis elegans Hypothetical
           protein W10G11.1 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 322 LLDSNGYTKTKNWNGYPPSVP 384
           LLD+     +KNWN YP  +P
Sbjct: 109 LLDARASECSKNWNPYPKEIP 129


>U53146-1|AAA96111.1|  348|Caenorhabditis elegans Hypothetical
           protein ZC411.1 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 394 INLFGMHSKPSDIYNGTFPSSNNFMRSVNG 483
           INL      P  ++ GT+  + NF++ V G
Sbjct: 235 INLLTGQKPPETVFQGTYVETRNFLKIVRG 264


>AC024696-1|AAK84516.1|  348|Caenorhabditis elegans Hypothetical
           protein F07B7.7 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 394 INLFGMHSKPSDIYNGTFPSSNNFMRSVNG 483
           INL      P  ++ GT+  + NF++ V G
Sbjct: 235 INLLTGQKPPETVFQGTYVETRNFLKIVRG 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,666
Number of Sequences: 27780
Number of extensions: 252449
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)