Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L11
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39760.1 68417.m05631 kelch repeat-containing F-box family pr...    29   2.0  
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    28   3.5  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    28   3.5  
At5g01160.1 68418.m00020 e-cadherin binding protein-related cont...    28   4.6  
At5g16610.2 68418.m01945 expressed protein                             27   8.1  

>At4g39760.1 68417.m05631 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 369

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/59 (30%), Positives = 21/59 (35%)
 Frame = +3

Query: 264 WIAKRLVINNKGLKWCQIMATRFKRIYENKELEWISTFSTSWQHQSIWHAFKTFRHIQR 440
           W     V N     WC I   R+  IY NK   W+ T S  W+          FR   R
Sbjct: 247 WKVTEAVFN---FSWCVIEKVRY--IYYNKNCWWLDTKSKDWRKIKGLDFLNKFRETDR 300


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 331 SNGYTKTKNWNGYPPSVPLGNINLFGMHSKPSDIYNGTFP 450
           SN Y    +++G  PS  +GNI+L    + PS  +NG  P
Sbjct: 189 SNLYMGLNSFSGQIPS-EIGNISLLKNFAAPSCFFNGPLP 227


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
           identical to ubiquitin-protein ligase 1 [Arabidopsis
           thaliana] GI:7108521; E3, HECT-domain protein family;
           similar to GI:7108521, GB:AAF36454 from [Arabidopsis
           thaliana]
          Length = 3891

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 124 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 225
           N++ F    G  EFV +++  V YED + E IR+
Sbjct: 534 NVVSF--FNGEPEFVNELVTLVSYEDTVPEKIRI 565


>At5g01160.1 68418.m00020 e-cadherin binding protein-related
           contains weak similarity to E-cadherin binding protein
           E7 [Mus musculus GP|9622093|gb|AAF89617
          Length = 360

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 334 NGYTKTKNWNGYPPSVPLGNINLFGMHSKPS 426
           +G ++  +  GYPP  P+ N+N  G +  PS
Sbjct: 294 SGGSEQSSLLGYPPPSPMTNLNFQGSYPPPS 324


>At5g16610.2 68418.m01945 expressed protein
          Length = 673

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 536 TRLYATQTNFRFAKEDSLPLTDLMKLL 456
           T + +++++F F +ED LPLT    LL
Sbjct: 9   TNISSSESDFTFLEEDHLPLTSRRSLL 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,350,612
Number of Sequences: 28952
Number of extensions: 239854
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)