Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_L10
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)            58   5e-09
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         27   5.9  
SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 21/53 (39%), Positives = 37/53 (69%)
 Frame = -1

Query: 329 SEFRLCYYPHKLSKFTKMLDEAFDNRAKHHIYADFKSIHEVPVPAFYIHVMEK 171
           S+FRL Y PH+L+ F+ +L + F   A+H  + DFK + ++  PA+Y+H+++K
Sbjct: 318 SKFRLSYCPHRLANFSNLLKDIFGKNAEHITFGDFKPLGKIENPAYYVHLIQK 370



 Score = 36.3 bits (80), Expect = 0.013
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = -3

Query: 429 DIKTSVLVVNGKPKLIALDYCIDTT 355
           DIKTSVL+V+G+  ++ LDY +DT+
Sbjct: 269 DIKTSVLLVDGRATMVTLDYTVDTS 293


>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 325 NSDCATIHINCQNSQKCLTR 266
           NSDC    I C  SQKCL R
Sbjct: 43  NSDCNLEQIYCPVSQKCLNR 62


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 325  NSDCATIHINCQNSQKCLTR 266
            NSDC    I C  SQKCL R
Sbjct: 1340 NSDCNLEQIYCPVSQKCLNR 1359


>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 359 LPSDEELNDKSEFRLCYYPHKLSKFTKMLDEAFDNRAKHHIYADF 225
           L ++EE N +   +LC   H++    + LDEA     K  IYAD+
Sbjct: 211 LIAEEERNRQELAQLCSKHHEIHALVQKLDEA----VKQCIYADY 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,315
Number of Sequences: 59808
Number of extensions: 231347
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)