BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_L10 (470 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8) 58 5e-09 SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9 SB_43823| Best HMM Match : MAM (HMM E-Value=0) 27 5.9 SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8 >SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8) Length = 382 Score = 57.6 bits (133), Expect = 5e-09 Identities = 21/53 (39%), Positives = 37/53 (69%) Frame = -1 Query: 329 SEFRLCYYPHKLSKFTKMLDEAFDNRAKHHIYADFKSIHEVPVPAFYIHVMEK 171 S+FRL Y PH+L+ F+ +L + F A+H + DFK + ++ PA+Y+H+++K Sbjct: 318 SKFRLSYCPHRLANFSNLLKDIFGKNAEHITFGDFKPLGKIENPAYYVHLIQK 370 Score = 36.3 bits (80), Expect = 0.013 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = -3 Query: 429 DIKTSVLVVNGKPKLIALDYCIDTT 355 DIKTSVL+V+G+ ++ LDY +DT+ Sbjct: 269 DIKTSVLLVDGRATMVTLDYTVDTS 293 >SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 105 Score = 27.5 bits (58), Expect = 5.9 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -2 Query: 325 NSDCATIHINCQNSQKCLTR 266 NSDC I C SQKCL R Sbjct: 43 NSDCNLEQIYCPVSQKCLNR 62 >SB_43823| Best HMM Match : MAM (HMM E-Value=0) Length = 1724 Score = 27.5 bits (58), Expect = 5.9 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -2 Query: 325 NSDCATIHINCQNSQKCLTR 266 NSDC I C SQKCL R Sbjct: 1340 NSDCNLEQIYCPVSQKCLNR 1359 >SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 482 Score = 27.1 bits (57), Expect = 7.8 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -1 Query: 359 LPSDEELNDKSEFRLCYYPHKLSKFTKMLDEAFDNRAKHHIYADF 225 L ++EE N + +LC H++ + LDEA K IYAD+ Sbjct: 211 LIAEEERNRQELAQLCSKHHEIHALVQKLDEA----VKQCIYADY 251 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,212,315 Number of Sequences: 59808 Number of extensions: 231347 Number of successful extensions: 531 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 495 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 531 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 982083920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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